PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021299610.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

AP2

Protein Properties

Length: 389aa MW: 44131.3 Da PI: 8.8306

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021299610.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	46.3	1e-14	68	127	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 s+++GV++++++gr++A+++d s+n k+ k+++lg ++ +e Aa+a++ a+ k++g XP_021299610.1 68 SRFRGVSRHRWTGRFEAHLWDkASWNPtqrKKgKQVYLGAYDEEESAARAYDLAAIKYWG 127 789****************877854556447***********************98 PP
2	AP2	49.6	1e-15	170	221	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV +++ +grW+A+I + g +k+ +lg++ t eeAa a++ a+ +++g XP_021299610.1 170 SRYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYSTQEEAAHAYDIAAIEYRG 221 79**99******99966...3.6***********************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 389 aa Download sequence
MEMITAKSEM GPRRRRLCMA EGDNIETKCI KRRRRDPSTG SLCCNNQQGE QQQQQGDQPT 60 ATTVKRSSRF RGVSRHRWTG RFEAHLWDKA SWNPTQRKKG KQVYLGAYDE EESAARAYDL 120 AAIKYWGTST FTNFSVSDYE KEIEIMKAVT KEEYLASLRR RSSGFSRGVS RYRGVARHHH 180 NGRWEARIGR VFGNKYLYLG TYSTQEEAAH AYDIAAIEYR GINAVTNFDL STYIRWLKPP 240 ANQTTLVSQP MTASTLFPTE QTLGVPLVNS NPFTVEALDS PRRQDVLQKK ATVSPCPKSS 300 SPTALSLLLR SSMFNKLVEQ NLNANFDETE ENDAKELQET VDNNGVGDTF YNEIDHVPDV 360 LPGLESEDSK LPLYNKTGQF TWNGALNLP

Sequence ? help Back to Top

Protein Sequence Length: 389 aa Download sequence

MEMITAKSEM GPRRRRLCMA EGDNIETKCI KRRRRDPSTG SLCCNNQQGE QQQQQGDQPT  60
ATTVKRSSRF RGVSRHRWTG RFEAHLWDKA SWNPTQRKKG KQVYLGAYDE EESAARAYDL  120
AAIKYWGTST FTNFSVSDYE KEIEIMKAVT KEEYLASLRR RSSGFSRGVS RYRGVARHHH  180
NGRWEARIGR VFGNKYLYLG TYSTQEEAAH AYDIAAIEYR GINAVTNFDL STYIRWLKPP  240
ANQTTLVSQP MTASTLFPTE QTLGVPLVNS NPFTVEALDS PRRQDVLQKK ATVSPCPKSS  300
SPTALSLLLR SSMFNKLVEQ NLNANFDETE ENDAKELQET VDNNGVGDTF YNEIDHVPDV  360
LPGLESEDSK LPLYNKTGQF TWNGALNLP

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	13	35	RRRRLCMAEGDNIETKCIKRRRR
2	14	36	RRRRLCMAEGDNIETKCIKRRRR
3	94	102	PTQRKKGKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54320.3	1e-76	AP2 family protein