PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021299596.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

MYB

Protein Properties

Length: 479aa MW: 53743.1 Da PI: 6.8945

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021299596.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	46.2	1.1e-14	25	69	3	48
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 WT+eEd++l + + ++G+++W+ Ia+++ +t qc+ rw++yl XP_021299596.1 25 TWTQEEDDILREQISLHGTENWAIIASKFK-DKTTRQCRRRWYTYL 69 6**************************9.***********97 PP
2	Myb_DNA-binding	44	5e-14	75	118	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g W++eEd ll +a k++G++ W+ Ia+ + gRt++ +k+r+ + XP_021299596.1 75 KGGWSPEEDMLLCEAQKLFGNR-WTEIAKVVS-GRTDNAVKNRFST 118 688*****************.*****.********976 PP

Sequence ? help Back to Top
Protein Sequence Length: 479 aa Download sequence
MQEAKKKNGG AGNEDSKKKE RHIVTWTQEE DDILREQISL HGTENWAIIA SKFKDKTTRQ 60 CRRRWYTYLN SDFKKGGWSP EEDMLLCEAQ KLFGNRWTEI AKVVSGRTDN AVKNRFSTLC 120 KKRAKYEALA KENTTTCINP NNKRILFQNG FNTDGTTECT APVKRMRRSH ISDAMENCNF 180 GDRAHKVSGT IINQQLRHPF AVLGQNLHNV NNVVVQSRIN SVKEVSNDAQ NNRAQGTFLK 240 KDDPKITALM QQAELLSSLA LKVNIDNTEQ SLENAWKVLQ DFLNQSKEND IFRYTISDID 300 FQLEDFKDLL EDLRSSNEGS RPSWRQPDLY EASPASSEYS TGSTLMPHPA GEKAEETQVK 360 IDALHQDILP SHIGEQNCGS EQEKGALSSA NTDHVEIIPS CDDQTNIVVA SSSSSADFSS 420 PVQVTPLFRS LAAAIPSPKF SESERNFLLK TLGMESPSPN PGNNLSQPPP CKRVLLHSL

Sequence ? help Back to Top

Protein Sequence Length: 479 aa Download sequence

MQEAKKKNGG AGNEDSKKKE RHIVTWTQEE DDILREQISL HGTENWAIIA SKFKDKTTRQ  60
CRRRWYTYLN SDFKKGGWSP EEDMLLCEAQ KLFGNRWTEI AKVVSGRTDN AVKNRFSTLC  120
KKRAKYEALA KENTTTCINP NNKRILFQNG FNTDGTTECT APVKRMRRSH ISDAMENCNF  180
GDRAHKVSGT IINQQLRHPF AVLGQNLHNV NNVVVQSRIN SVKEVSNDAQ NNRAQGTFLK  240
KDDPKITALM QQAELLSSLA LKVNIDNTEQ SLENAWKVLQ DFLNQSKEND IFRYTISDID  300
FQLEDFKDLL EDLRSSNEGS RPSWRQPDLY EASPASSEYS TGSTLMPHPA GEKAEETQVK  360
IDALHQDILP SHIGEQNCGS EQEKGALSSA NTDHVEIIPS CDDQTNIVVA SSSSSADFSS  420
PVQVTPLFRS LAAAIPSPKF SESERNFLLK TLGMESPSPN PGNNLSQPPP CKRVLLHSL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02820.2	0.0	MYB family protein