PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021298224.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

FAR1

Protein Properties

Length: 739aa MW: 85521.3 Da PI: 4.8137

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021298224.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	68.6	1.6e-21	130	213	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 ++Yn YAke+GF +r+++s ++++++e + ++C++eg+++ ++ + ++r+etrtgC a++++++ ++++w+v++++leHnH + XP_021298224.1 130 NYYNCYAKELGFAIRVKSSWTKRNSKEKRGAVLCCNCEGFKTIKEAN-----SRRKETRTGCLAMIRLRLVESNRWRVDEVKLEHNHLF 213 69**************************************99888.....8999*****************************76 PP

Sequence ? help Back to Top
Protein Sequence Length: 739 aa Download sequence
MADDSTFSPS DHQALSPSPD LDITIEEGSQ NSEQLFEDDG HELEMEGNDL EIEGNDIDIE 60 SNGLEIEGNG LDIESNGLQD CDQMLEIEDN HENDGDDTTA VAVENGISQG KDYPPPVVGM 120 EFESYDDAYN YYNCYAKELG FAIRVKSSWT KRNSKEKRGA VLCCNCEGFK TIKEANSRRK 180 ETRTGCLAMI RLRLVESNRW RVDEVKLEHN HLFDHERAQN CKSHKKMDAV AKRKVEPAVD 240 VEVRTIKLYR TPVVDPVGYG SSNSLEGEIS DNVDRSKRLK LKKGDSQIIY NYFSRIQLAN 300 PNFVYLMDLN DEGYLRNVFW IDSRSRAAYG YFGDVVKIDT TCLSNKYEIP LVAFVGVNHH 360 GQSILLGCGL LADDTFETYV WLFRAWLTCM SGRPPQTIIT DQCRAMQGAI SEVFPRAHHR 420 LHLSHIMQSI LENLGELQES GVFQMILSRI VYDSLKVDEF EMGWDDMIRR FGIVDHAWLR 480 SLYEERERWA PVYLKDTFFA GMCSFQSGES MSSFFDGYVH KQTSLEEFFD MYELILQKKH 540 KREALDDLES GDSDPMLKTR CYYEIQLSKL YTNSIFRRFQ DEVVMLTSCF SITQVNANGP 600 VITYMIKERE GEGDQRDMRN FEVMYDKAGM EIRCICSCFN FNGYLCRHGL YVLNYNGLEE 660 IPFQYILSRW RKDFKRLYIP DLGSNNVDIT NPVQWFDHLY RRSMQVVEEG MRSQDHYMVA 720 WQAFKESLNK VRLVADKHV

Sequence ? help Back to Top

Protein Sequence Length: 739 aa Download sequence

MADDSTFSPS DHQALSPSPD LDITIEEGSQ NSEQLFEDDG HELEMEGNDL EIEGNDIDIE  60
SNGLEIEGNG LDIESNGLQD CDQMLEIEDN HENDGDDTTA VAVENGISQG KDYPPPVVGM  120
EFESYDDAYN YYNCYAKELG FAIRVKSSWT KRNSKEKRGA VLCCNCEGFK TIKEANSRRK  180
ETRTGCLAMI RLRLVESNRW RVDEVKLEHN HLFDHERAQN CKSHKKMDAV AKRKVEPAVD  240
VEVRTIKLYR TPVVDPVGYG SSNSLEGEIS DNVDRSKRLK LKKGDSQIIY NYFSRIQLAN  300
PNFVYLMDLN DEGYLRNVFW IDSRSRAAYG YFGDVVKIDT TCLSNKYEIP LVAFVGVNHH  360
GQSILLGCGL LADDTFETYV WLFRAWLTCM SGRPPQTIIT DQCRAMQGAI SEVFPRAHHR  420
LHLSHIMQSI LENLGELQES GVFQMILSRI VYDSLKVDEF EMGWDDMIRR FGIVDHAWLR  480
SLYEERERWA PVYLKDTFFA GMCSFQSGES MSSFFDGYVH KQTSLEEFFD MYELILQKKH  540
KREALDDLES GDSDPMLKTR CYYEIQLSKL YTNSIFRRFQ DEVVMLTSCF SITQVNANGP  600
VITYMIKERE GEGDQRDMRN FEVMYDKAGM EIRCICSCFN FNGYLCRHGL YVLNYNGLEE  660
IPFQYILSRW RKDFKRLYIP DLGSNNVDIT NPVQWFDHLY RRSMQVVEEG MRSQDHYMVA  720
WQAFKESLNK VRLVADKHV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G80010.1	0.0	FAR1 family protein