PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021298193.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family HD-ZIP
Protein Properties Length: 843aa    MW: 92575.6 Da    PI: 5.9372
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021298193.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox581.6e-18563357
                    --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
        Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                    k  ++t+eq+e+Le+++ ++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  XP_021298193.1  5 KYVRYTPEQVEALERVYSECPKPSSLRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 63
                    6789*****************************************************97 PP
2START174.85.3e-551563623204
                     HHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEEE CS
           START   3 aeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlmv 95 
                     aee+++e+++ka+ ++  Wv++  +++g++++ +++ s+++sg a+ra+g+v  +++  v+e+l+d++ W ++++  ++l vi +g  g+++l++
  XP_021298193.1 156 AEETLAEFLSKATGTAVDWVQMIGMKPGPDSIGIVAVSRNCSGVAARACGLVSLEPT-KVAEILKDRLSWFRDCRCLDVLSVIPTGngGTIELIY 249
                     7899*****************************************************.8999999999*************************** PP

                     EXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHH CS
           START  96 aelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvk 186
                     ++++a+++l++ Rdf+++Ry+ +l++g++vi+++S++s +  p+   +ss+vRae+lpSg+li+p+++g+s +++v+hvdl+ ++++++lr+l++
  XP_021298193.1 250 MQTYAPTTLAAaRDFWTLRYTTSLEDGSLVICERSLTSATGGPTgppTSSFVRAEVLPSGFLIRPCEGGGSIIHIVDHVDLDVWSVPEVLRPLYE 344
                     ****************************************9999999************************************************ PP

                     HHHHHHHHHHHHHTXXXX CS
           START 187 sglaegaktwvatlqrqc 204
                     s+ + ++k++ a+l++ +
  XP_021298193.1 345 SSKILAQKMTIAALRHIR 362
                     *************99865 PP
Sequence ? help Back to Top
Protein Sequence    Length: 843 aa     Download sequence    
MDSSKYVRYT PEQVEALERV YSECPKPSSL RRQQLIRECP ILSNIEPKQI KVWFQNRRCR  60
EKQRKEASRL QTVNRKLTAM NKLLMEENDR LQKQVSQLVY ENGYMRQQLQ TGSATTTDNN  120
SCESVVMSGQ HQQQQNPTPQ HPQRDANNPA GLLAMAEETL AEFLSKATGT AVDWVQMIGM  180
KPGPDSIGIV AVSRNCSGVA ARACGLVSLE PTKVAEILKD RLSWFRDCRC LDVLSVIPTG  240
NGGTIELIYM QTYAPTTLAA ARDFWTLRYT TSLEDGSLVI CERSLTSATG GPTGPPTSSF  300
VRAEVLPSGF LIRPCEGGGS IIHIVDHVDL DVWSVPEVLR PLYESSKILA QKMTIAALRH  360
IRQIAQETSG EIQYGGGRQP AVLRTFSQRL CRGFNDAVNG FADDGWSLMG SDGVEDVTIM  420
INSSPGKFLG SQYNTSMFPS FGGGVLCAKA SMLLQNVPPA LLVRFLREHR SEWADYGVDT  480
YSAACLKASP YAVPCARPGG FPSSQVILPL AHTVEHEEFL EVVRLEGHAF TPEDVSLARD  540
MYLLQLCSGI DENAVGTCAQ LVFAPIDESF ADDAPLLPSG FRVIPLDPKT VTLTCQSSAD  600
GAGATRTLDL ASALEVGTGS NRLAGDGDPS NYNLRSVLTI AFQFTFENHS RENVAAMARQ  660
YVRSVVGSVQ RVAMAIAPSR LSCNMEPKAL PGSPEALTLA RWIFRSYRIH TGEELLRVDS  720
QAGDALLKQL WHHSDAIMCC SLKTNASPVF TFANQAGLDM LETTLVALQD IMLDKILDEA  780
GRKILCSEFS KIMQQGFAYL PAGICVSSMG RPVSYEQAIA WKVLNDDDAN HCLTFMFINW  840
SFV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34710.10.0HD-ZIP family protein