PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021298192.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family HD-ZIP
Protein Properties Length: 848aa    MW: 93257.4 Da    PI: 6.1425
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021298192.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox581.6e-181977357
                    --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
        Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                    k  ++t+eq+e+Le+++ ++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  XP_021298192.1 19 KYVRYTPEQVEALERVYSECPKPSSLRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 77
                    6789*****************************************************97 PP
2START174.85.3e-551703763204
                     HHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEEE CS
           START   3 aeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlmv 95 
                     aee+++e+++ka+ ++  Wv++  +++g++++ +++ s+++sg a+ra+g+v  +++  v+e+l+d++ W ++++  ++l vi +g  g+++l++
  XP_021298192.1 170 AEETLAEFLSKATGTAVDWVQMIGMKPGPDSIGIVAVSRNCSGVAARACGLVSLEPT-KVAEILKDRLSWFRDCRCLDVLSVIPTGngGTIELIY 263
                     7899*****************************************************.8999999999*************************** PP

                     EXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHH CS
           START  96 aelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvk 186
                     ++++a+++l++ Rdf+++Ry+ +l++g++vi+++S++s +  p+   +ss+vRae+lpSg+li+p+++g+s +++v+hvdl+ ++++++lr+l++
  XP_021298192.1 264 MQTYAPTTLAAaRDFWTLRYTTSLEDGSLVICERSLTSATGGPTgppTSSFVRAEVLPSGFLIRPCEGGGSIIHIVDHVDLDVWSVPEVLRPLYE 358
                     ****************************************9999999************************************************ PP

                     HHHHHHHHHHHHHTXXXX CS
           START 187 sglaegaktwvatlqrqc 204
                     s+ + ++k++ a+l++ +
  XP_021298192.1 359 SSKILAQKMTIAALRHIR 376
                     *************99865 PP
Sequence ? help Back to Top
Protein Sequence    Length: 848 aa     Download sequence    
MALSMHKDSS NNKQMDSSKY VRYTPEQVEA LERVYSECPK PSSLRRQQLI RECPILSNIE  60
PKQIKVWFQN RRCREKQRKE ASRLQTVNRK LTAMNKLLME ENDRLQKQVS QLVYENGYMR  120
QQLQTGSATT TDNNSCESVV MSGQHQQQQN PTPQHPQRDA NNPAGLLAMA EETLAEFLSK  180
ATGTAVDWVQ MIGMKPGPDS IGIVAVSRNC SGVAARACGL VSLEPTKVAE ILKDRLSWFR  240
DCRCLDVLSV IPTGNGGTIE LIYMQTYAPT TLAAARDFWT LRYTTSLEDG SLVICERSLT  300
SATGGPTGPP TSSFVRAEVL PSGFLIRPCE GGGSIIHIVD HVDLDVWSVP EVLRPLYESS  360
KILAQKMTIA ALRHIRQIAQ ETSGEIQYGG GRQPAVLRTF SQRLCRGFND AVNGFADDGW  420
SLMGSDGVED VTIMINSSPG KFLGSQYNTS MFPSFGGGVL CAKASMLLQN VPPALLVRFL  480
REHRSEWADY GVDTYSAACL KASPYAVPCA RPGGFPSSQV ILPLAHTVEH EEFLEVVRLE  540
GHAFTPEDVS LARDMYLLQL CSGIDENAVG TCAQLVFAPI DESFADDAPL LPSGFRVIPL  600
DPKTDGAGAT RTLDLASALE VGTGSNRLAG DGDPSNYNLR SVLTIAFQFT FENHSRENVA  660
AMARQYVRSV VGSVQRVAMA IAPSRLSCNM EPKALPGSPE ALTLARWIFR SYRIHTGEEL  720
LRVDSQAGDA LLKQLWHHSD AIMCCSLKTN ASPVFTFANQ AGLDMLETTL VALQDIMLDK  780
ILDEAGRKIL CSEFSKIMQQ GFAYLPAGIC VSSMGRPVSY EQAIAWKVLN DDDANHCLTF  840
MFINWSFV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34710.10.0HD-ZIP family protein