PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_021298191.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
|
||||||||
Family | HD-ZIP | ||||||||
Protein Properties | Length: 857aa MW: 94148.4 Da PI: 6.142 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 58 | 1.6e-18 | 19 | 77 | 3 | 57 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 k ++t+eq+e+Le+++ ++++ps +r++L +++ +++ +q+kvWFqNrR +ek+ XP_021298191.1 19 KYVRYTPEQVEALERVYSECPKPSSLRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 77 6789*****************************************************97 PP | |||||||
2 | START | 174.8 | 5.4e-55 | 170 | 376 | 3 | 204 |
HHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEEE CS START 3 aeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlmv 95 aee+++e+++ka+ ++ Wv++ +++g++++ +++ s+++sg a+ra+g+v +++ v+e+l+d++ W ++++ ++l vi +g g+++l++ XP_021298191.1 170 AEETLAEFLSKATGTAVDWVQMIGMKPGPDSIGIVAVSRNCSGVAARACGLVSLEPT-KVAEILKDRLSWFRDCRCLDVLSVIPTGngGTIELIY 263 7899*****************************************************.8999999999*************************** PP EXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHH CS START 96 aelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvk 186 ++++a+++l++ Rdf+++Ry+ +l++g++vi+++S++s + p+ +ss+vRae+lpSg+li+p+++g+s +++v+hvdl+ ++++++lr+l++ XP_021298191.1 264 MQTYAPTTLAAaRDFWTLRYTTSLEDGSLVICERSLTSATGGPTgppTSSFVRAEVLPSGFLIRPCEGGGSIIHIVDHVDLDVWSVPEVLRPLYE 358 ****************************************9999999************************************************ PP HHHHHHHHHHHHHTXXXX CS START 187 sglaegaktwvatlqrqc 204 s+ + ++k++ a+l++ + XP_021298191.1 359 SSKILAQKMTIAALRHIR 376 *************99865 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 857 aa Download sequence |
MALSMHKDSS NNKQMDSSKY VRYTPEQVEA LERVYSECPK PSSLRRQQLI RECPILSNIE 60 PKQIKVWFQN RRCREKQRKE ASRLQTVNRK LTAMNKLLME ENDRLQKQVS QLVYENGYMR 120 QQLQTGSATT TDNNSCESVV MSGQHQQQQN PTPQHPQRDA NNPAGLLAMA EETLAEFLSK 180 ATGTAVDWVQ MIGMKPGPDS IGIVAVSRNC SGVAARACGL VSLEPTKVAE ILKDRLSWFR 240 DCRCLDVLSV IPTGNGGTIE LIYMQTYAPT TLAAARDFWT LRYTTSLEDG SLVICERSLT 300 SATGGPTGPP TSSFVRAEVL PSGFLIRPCE GGGSIIHIVD HVDLDVWSVP EVLRPLYESS 360 KILAQKMTIA ALRHIRQIAQ ETSGEIQYGG GRQPAVLRTF SQRLCRGFND AVNGFADDGW 420 SLMGSDGVED VTIMINSSPG KFLGSQYNTS MFPSFGGGVL CAKASMLLQN VPPALLVRFL 480 REHRSEWADY GVDTYSAACL KASPYAVPCA RPGGFPSSQV ILPLAHTVEH EEFLEVVRLE 540 GHAFTPEDVS LARDMYLLQL CSGIDENAVG TCAQLVFAPI DESFADDAPL LPSGFRVIPL 600 DPKTVTLTCQ SSADGAGATR TLDLASALEV GTGSNRLAGD GDPSNYNLRS VLTIAFQFTF 660 ENHSRENVAA MARQYVRSVV GSVQRVAMAI APSRLSCNME PKALPGSPEA LTLARWIFRS 720 YRIHTGEELL RVDSQAGDAL LKQLWHHSDA IMCCSLKTNA SPVFTFANQA GLDMLETTLV 780 ALQDIMLDKI LDEAGRKILC SEFSKIMQQG FAYLPAGICV SSMGRPVSYE QAIAWKVLND 840 DDANHCLTFM FINWSFV |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G34710.1 | 0.0 | HD-ZIP family protein |