PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021297729.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

MYB

Protein Properties

Length: 325aa MW: 36587.9 Da PI: 9.892

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021297729.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	54.8	2.2e-17	33	78	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg W + Ed +l+++v+++G+ +W++Ia++++ gRt+k+c++rw++ XP_021297729.1 33 RGHWKPAEDSKLKELVALYGPQNWNLIAEKLQ-GRTGKSCRLRWFNQ 78 899***************************.*********996 PP
2	Myb_DNA-binding	50	7e-16	85	128	1	46
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 ++++++eE+e+l a+k +G++ W+ Iar ++ gRt++ +k+ w+ XP_021297729.1 85 KKAFSEEEEERLMTAHKAYGNK-WAMIARLFP-GRTDNAVKNQWHV 128 679*****************.*****.*********86 PP

Sequence ? help Back to Top
Protein Sequence Length: 325 aa Download sequence
MEDIRRRICM NEDNPGDCFL SGKDVGQSKV CARGHWKPAE DSKLKELVAL YGPQNWNLIA 60 EKLQGRTGKS CRLRWFNQLD PRINKKAFSE EEEERLMTAH KAYGNKWAMI ARLFPGRTDN 120 AVKNQWHVIM ARKYREQASA YRRRKLSQAI QRKMEENGNL NCREAANGNN TNSPKNPSVG 180 SNGFYNKTSR KGAATCVRDL FLGSKSHNSF SPGEGACRNR TPLDFFSDYI RPESFRWNSR 240 QWNMLQDETT LTASYPYSHP SQMLMQQSSN HQRSGFSDSI ASVSQVTVTE TSSSSPSAAE 300 KAAASHLETT ASPPPFIDFL GVGAS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G26780.1	8e-73	MYB family protein