PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021297701.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

AP2

Protein Properties

Length: 387aa MW: 43877.7 Da PI: 7.1151

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021297701.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	48.5	2.2e-15	69	128	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 s+++GV++++++gr++A+++d s+n k+ k+++lg ++ +e Aa+a++ a++k++g XP_021297701.1 69 SRFRGVSRHRWTGRYEAHLWDkLSWNVtqkKKgKQVYLGAYDDEEAAARAYDLAALKYWG 128 789****************888855555447***********************98 PP
2	AP2	52.4	1.3e-16	171	222	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV +++ +grW+A+I + g +k+ +lg++ t eeAa+a++ a+ +++g XP_021297701.1 171 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYSTQEEAARAYDIAAIEYRG 222 89**99******99966...3.6***********************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 387 aa Download sequence
MEMILVKDEQ FQGRRRICSA DGEIQATRCV KRRRRDPASV ALGCYDNQGQ QPQQQNDQTN 60 AATTVKRSSR FRGVSRHRWT GRYEAHLWDK LSWNVTQKKK GKQVYLGAYD DEEAAARAYD 120 LAALKYWGTS TFTNFPISDY EKEIEIMQTV AKEEYLASLR RKSSGFSRGV SKYRGVARHH 180 HNGRWEARIG RVFGNKYLYL GTYSTQEEAA RAYDIAAIEY RGINAVTNFD LSTYIRWLKP 240 GTNNPVAANE SLGMVESESV PLASSYSPRE ESKSSFYHSF ATEYLNSPQK QEVVEGKIPV 300 NSYNKSSSPT ALGLLLRSSI FRELVEKNAN VPEDESTDAD DEPKNQQAGS DDEFGGLFYD 360 GIGDFQFICS SGKDSIELQE REVPFIL

Sequence ? help Back to Top

Protein Sequence Length: 387 aa Download sequence

MEMILVKDEQ FQGRRRICSA DGEIQATRCV KRRRRDPASV ALGCYDNQGQ QPQQQNDQTN  60
AATTVKRSSR FRGVSRHRWT GRYEAHLWDK LSWNVTQKKK GKQVYLGAYD DEEAAARAYD  120
LAALKYWGTS TFTNFPISDY EKEIEIMQTV AKEEYLASLR RKSSGFSRGV SKYRGVARHH  180
HNGRWEARIG RVFGNKYLYL GTYSTQEEAA RAYDIAAIEY RGINAVTNFD LSTYIRWLKP  240
GTNNPVAANE SLGMVESESV PLASSYSPRE ESKSSFYHSF ATEYLNSPQK QEVVEGKIPV  300
NSYNKSSSPT ALGLLLRSSI FRELVEKNAN VPEDESTDAD DEPKNQQAGS DDEFGGLFYD  360
GIGDFQFICS SGKDSIELQE REVPFIL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	14	35	RRRICSADGEIQATRCVKRRRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54320.3	2e-80	AP2 family protein