PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021291923.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

MYB_related

Protein Properties

Length: 1181aa MW: 131635 Da PI: 9.271

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021291923.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	32.8	1.6e-10	47	82	3	40
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40 WT+eE e++++a +++G++ Wk++a + +R+ +++ XP_021291923.1 47 QWTKEELERFYEAYRKYGKD-WKKVATVVR-NRSVEMV 82 6***************99.*****.98876 PP

Sequence ? help Back to Top
Protein Sequence Length: 1181 aa Download sequence
MAPSRKSKSV NKKFSYVNEV ASSKDGDSSA KRSGQRKRKL SDMLGPQWTK EELERFYEAY 60 RKYGKDWKKV ATVVRNRSVE MVEALYTMNR AYLSLPEGTA SVVGLIAMMT DHYCVMGGSD 120 SEQESNEGVG ASRKPQKRSR GKLRDQPSKS LDKSFPDLLQ FQSAASSYGC LSLLKRRRSE 180 SRPRAVGKRT PRVPISFSHD KNRGERYFSP IRQGMKLKVD TVDDDVAHEI ALVLTEASQR 240 GGSPQVSRTP NRKAEASSPI LNSERMNAES ETTSAKIHGS EMDEDACELS LGSTEADNAD 300 YARGKNYSMN IEGTGTIEVQ QKGKRYYRRK PGVEESVNNH LEDTKEACSG TEEDQKLCDF 360 KGKFEAEVAD TKTSRGSIKG PRKRSKKVLF GGVEDTSFDA LQTLADLSLM MPETAADTES 420 SVQFKEEKNE VVEKTKLKGN HPVSGAKGSA PKTCKQGKVF GHDVRAIPEA KEETHPGNVG 480 MRKRRQKSSP YKIPKDETDA DSHLGESRNI EASDEVKNLP SKCKRSNNVA HSKQGKSVRP 540 PEHRSSSTDH GRDLNNSAPS TIQVSPVNRV NLPTKVRSKR KIDAQKPVIG KDIKSSDSIV 600 KGKFSVPVSL FQDRALNLKE KLCNFLCPYQ ARRWCTFEWF YSTIDYPWFA KREFVEYLDH 660 VGLGHVPRLT RVEWGVIRSS LGKPRRFSEQ FLKEEREKLH QYRESVRMHY AELRAGIGEG 720 LPTDLARPLS VGQRVIAIHP KTRQIHDGNV LIVDRSRYRI QFDSTELGVE SVMDIDCMPL 780 NPLENLPASL VRQNAAVNKF FENFHELKMN GQPKESKMEE NIKFAPCEEN ANSPSRTSPS 840 TFNVGNISQP VKVDPSSPNL QLKVGPMETV YTQQAVNSQP SALALIQARE ADVEALSQLT 900 RALDKKHLQE AVVSELRRMN DEVLENQKGG DNSIKDSDSF KKQYAAVLLQ LNEVNEQVSS 960 ALFCLRQRNT YQGTSSVRLL KPLAKIGEHG CQLSSFDHSM HHAQESVSHV AEIVESSRTK 1020 ARSMVDAAMQ AMSSLRKGGK SIERIEDAID FVNNQLSVDD LSVPSLRSSI PIDSARSTVT 1080 FHDHLTASVS NPLATGHAPD TKLSDQDDLR IPSDLIAHCV ATLLMIQKCT ERQFPPGDVA 1140 QVLDSAVTSL KPCCSQNLSI YAEIQKCMGI IRNQILALVP T

Sequence ? help Back to Top

Protein Sequence Length: 1181 aa Download sequence

MAPSRKSKSV NKKFSYVNEV ASSKDGDSSA KRSGQRKRKL SDMLGPQWTK EELERFYEAY  60
RKYGKDWKKV ATVVRNRSVE MVEALYTMNR AYLSLPEGTA SVVGLIAMMT DHYCVMGGSD  120
SEQESNEGVG ASRKPQKRSR GKLRDQPSKS LDKSFPDLLQ FQSAASSYGC LSLLKRRRSE  180
SRPRAVGKRT PRVPISFSHD KNRGERYFSP IRQGMKLKVD TVDDDVAHEI ALVLTEASQR  240
GGSPQVSRTP NRKAEASSPI LNSERMNAES ETTSAKIHGS EMDEDACELS LGSTEADNAD  300
YARGKNYSMN IEGTGTIEVQ QKGKRYYRRK PGVEESVNNH LEDTKEACSG TEEDQKLCDF  360
KGKFEAEVAD TKTSRGSIKG PRKRSKKVLF GGVEDTSFDA LQTLADLSLM MPETAADTES  420
SVQFKEEKNE VVEKTKLKGN HPVSGAKGSA PKTCKQGKVF GHDVRAIPEA KEETHPGNVG  480
MRKRRQKSSP YKIPKDETDA DSHLGESRNI EASDEVKNLP SKCKRSNNVA HSKQGKSVRP  540
PEHRSSSTDH GRDLNNSAPS TIQVSPVNRV NLPTKVRSKR KIDAQKPVIG KDIKSSDSIV  600
KGKFSVPVSL FQDRALNLKE KLCNFLCPYQ ARRWCTFEWF YSTIDYPWFA KREFVEYLDH  660
VGLGHVPRLT RVEWGVIRSS LGKPRRFSEQ FLKEEREKLH QYRESVRMHY AELRAGIGEG  720
LPTDLARPLS VGQRVIAIHP KTRQIHDGNV LIVDRSRYRI QFDSTELGVE SVMDIDCMPL  780
NPLENLPASL VRQNAAVNKF FENFHELKMN GQPKESKMEE NIKFAPCEEN ANSPSRTSPS  840
TFNVGNISQP VKVDPSSPNL QLKVGPMETV YTQQAVNSQP SALALIQARE ADVEALSQLT  900
RALDKKHLQE AVVSELRRMN DEVLENQKGG DNSIKDSDSF KKQYAAVLLQ LNEVNEQVSS  960
ALFCLRQRNT YQGTSSVRLL KPLAKIGEHG CQLSSFDHSM HHAQESVSHV AEIVESSRTK  1020
ARSMVDAAMQ AMSSLRKGGK SIERIEDAID FVNNQLSVDD LSVPSLRSSI PIDSARSTVT  1080
FHDHLTASVS NPLATGHAPD TKLSDQDDLR IPSDLIAHCV ATLLMIQKCT ERQFPPGDVA  1140
QVLDSAVTSL KPCCSQNLSI YAEIQKCMGI IRNQILALVP T

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	481	486	MRKRRQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21430.2	0.0	MYB_related family protein