PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021287716.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family MIKC_MADS
Protein Properties Length: 212aa    MW: 24708.4 Da    PI: 10.4217
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021287716.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF96.79.8e-31959151
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    krien + rqvtfskRrng+lKKA+ELSvLCdaevaviifs++g++ye+s+
  XP_021287716.1  9 KRIENATSRQVTFSKRRNGLLKKAYELSVLCDAEVAVIIFSPKGRVYEFSN 59
                    79***********************************************95 PP
2K-box73.46.4e-2582172999
           K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                       e+ +++l+ e+a++ k+ie L+ + R+llG++L+ +s++eLq++++qLe+sl++iR++K+++++eqie+l+ ke+ l+een++L++k++
  XP_021287716.1  82 EMERYSQQLRVEAANMVKKIELLEVSRRKLLGQGLGLCSVEELQEVQNQLERSLRNIRARKSHVFKEQIEQLKAKERLLREENTKLSEKFA 172
                     5677789999******************************************************************************986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 212 aa     Download sequence    
MARGKIQMKR IENATSRQVT FSKRRNGLLK KAYELSVLCD AEVAVIIFSP KGRVYEFSNS  60
DMQKTIERYH KYIKEVQNDK PEMERYSQQL RVEAANMVKK IELLEVSRRK LLGQGLGLCS  120
VEELQEVQNQ LERSLRNIRA RKSHVFKEQI EQLKAKERLL REENTKLSEK FAGKQKRPST  180
QRKEAAIFGS QSSQRSEVET ELFIGLPENR CS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45660.12e-76MIKC_MADS family protein