PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021285772.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

C3H

Protein Properties

Length: 472aa MW: 52403.1 Da PI: 4.9097

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021285772.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	38.6	1.8e-12	134	156	4	26
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 e C ++++tG Ck+G++CkF+H+ XP_021285772.1 134 EDCAYYMKTGLCKFGSNCKFNHP 156 89********************9 PP
2	zf-CCCH	29.6	1.2e-09	182	204	5	27
--SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHgp 27 +C++++rtG Ck+G C+++H++ XP_021285772.1 182 ECKYYLRTGGCKFGKACRYNHSR 204 8********************95 PP
3	zf-CCCH	39.8	7.3e-13	225	249	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++++C++++r+G CkyG++C+F+H+ XP_021285772.1 225 GEKECPYYMRNGSCKYGANCRFNHP 249 7899********************9 PP
4	zf-CCCH	28.6	2.4e-09	359	385	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C++f++tG Ck+ ++Ck++H++ XP_021285772.1 359 PGQPECSYFMKTGDCKFKSNCKYHHPK 385 5789*********************96 PP
5	zf-CCCH	36.3	9.7e-12	406	430	2	26
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++++C++++r+G+Ck+G+ CkF H+ XP_021285772.1 406 DQSICSHYSRYGICKFGPACKFDHS 430 6789********************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 472 aa Download sequence
MSQSEETPIS DSTPTDSALH LGLPSLDPDL TANPDPSPSD LNHSAQETEH DQSNLEQQLQ 60 YLDLKEEEGE EXGGDEEAEK KDDGERESDN EXGRGRYRDD EDEVEEKNEY EDDDDENVKN 120 EGRRSHYPVR PEAEDCAYYM KTGLCKFGSN CKFNHPVRRK IQAVKEKVKE KDESTEKPIQ 180 TECKYYLRTG GCKFGKACRY NHSRAKTAVA PILELNFLGL PIRPGEKECP YYMRNGSCKY 240 GANCRFNHPD PTTAGACDPP SGYGNGGSVS SQAASQVNIA SWSSPRTLNE TAYMPMMFSP 300 TQGVPPPNPE WNGYQTTVYP PERNLHPTPA YVMNNPSTET TVYTHHQPQM LVDEFPVRPG 360 QPECSYFMKT GDCKFKSNCK YHHPKNRVAK PSPCTLSDKG LPLRPDQSIC SHYSRYGICK 420 FGPACKFDHS VQAAPSAVSG LDQPLPFSNS AATEESGIAG SNGTDTAVQQ SV

Sequence ? help Back to Top

Protein Sequence Length: 472 aa Download sequence

MSQSEETPIS DSTPTDSALH LGLPSLDPDL TANPDPSPSD LNHSAQETEH DQSNLEQQLQ  60
YLDLKEEEGE EXGGDEEAEK KDDGERESDN EXGRGRYRDD EDEVEEKNEY EDDDDENVKN  120
EGRRSHYPVR PEAEDCAYYM KTGLCKFGSN CKFNHPVRRK IQAVKEKVKE KDESTEKPIQ  180
TECKYYLRTG GCKFGKACRY NHSRAKTAVA PILELNFLGL PIRPGEKECP YYMRNGSCKY  240
GANCRFNHPD PTTAGACDPP SGYGNGGSVS SQAASQVNIA SWSSPRTLNE TAYMPMMFSP  300
TQGVPPPNPE WNGYQTTVYP PERNLHPTPA YVMNNPSTET TVYTHHQPQM LVDEFPVRPG  360
QPECSYFMKT GDCKFKSNCK YHHPKNRVAK PSPCTLSDKG LPLRPDQSIC SHYSRYGICK  420
FGPACKFDHS VQAAPSAVSG LDQPLPFSNS AATEESGIAG SNGTDTAVQQ SV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48440.1	1e-141	C3H family protein