PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021284854.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

AP2

Protein Properties

Length: 680aa MW: 75001.1 Da PI: 6.637

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021284854.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	50.9	3.9e-16	325	384	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++gr++A+++d ++ g ++ ++++lg ++ +e+Aa+a++ a++k++g XP_021284854.1 325 SQYRGVTRHRWTGRYEAHLWDnSCKkEGqtRKgRQVYLGGYDMEEKAARAYDLAALKYWG 384 78*****************988886678446***********************98 PP
2	AP2	45.2	2.3e-14	429	478	3	55
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g XP_021284854.1 429 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDVAAIKFRG 478 9*************988532...5**********************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 680 aa Download sequence
MKTMNDSSNG SNNNWLAFSL SPHMKMEVAT DPQHRQHQYH HHSQGSAAAS VSNAVPTSFY 60 LSSHLSGSGI CYGVGESGGF HAPLSVMPLK SDGSLCIMEA LSRSQTEGIV TTSSPKLEDF 120 LGGATMETHQ YGGHERETMA LSLDSMYYHQ NADQETNRQH SLDLLQEPFR HQDQEFAVQT 180 HPYYSGLACQ GMYQSPLEEE TKDAQLADCD SQIPQMGEDA MPCFRNWVAR HYSTHSSLEQ 240 QMTSSMVDDG PASGSVGTMG CGDLQSLSLS MSPGSQSSCV TAPRQISPTA TECVAMETKK 300 RGPGKVGQKQ PVHRKSIDTF GQRTSQYRGV TRHRWTGRYE AHLWDNSCKK EGQTRKGRQV 360 YLGGYDMEEK AARAYDLAAL KYWGPSTHIN FPLENYREEL EEMKNMSRQE YVAHLRRKSS 420 GFSRGASMYR GVTRHHQHGR WQARIGRVAG NKDLYLGTFS TQEEAAEAYD VAAIKFRGVN 480 AVTNFDITRY DVERIMASNT LLAGELARRN KEIDSNNEGG DYNTPALTNG ETMQPEANNG 540 NGSDWKMVLY QSPQQQSSVG AVESLEQKSL SNGSYRDPTF SMALQDLVGI DSVNSSQPMV 600 DESTKLGIHY SNPSSLVTSV SNSREGSPDK TGSSMLFAKP PLASKFISPA NGVSWFPSAQ 660 LRPAAISMAH LPLFAAWNDT

Sequence ? help Back to Top

Protein Sequence Length: 680 aa Download sequence

MKTMNDSSNG SNNNWLAFSL SPHMKMEVAT DPQHRQHQYH HHSQGSAAAS VSNAVPTSFY  60
LSSHLSGSGI CYGVGESGGF HAPLSVMPLK SDGSLCIMEA LSRSQTEGIV TTSSPKLEDF  120
LGGATMETHQ YGGHERETMA LSLDSMYYHQ NADQETNRQH SLDLLQEPFR HQDQEFAVQT  180
HPYYSGLACQ GMYQSPLEEE TKDAQLADCD SQIPQMGEDA MPCFRNWVAR HYSTHSSLEQ  240
QMTSSMVDDG PASGSVGTMG CGDLQSLSLS MSPGSQSSCV TAPRQISPTA TECVAMETKK  300
RGPGKVGQKQ PVHRKSIDTF GQRTSQYRGV TRHRWTGRYE AHLWDNSCKK EGQTRKGRQV  360
YLGGYDMEEK AARAYDLAAL KYWGPSTHIN FPLENYREEL EEMKNMSRQE YVAHLRRKSS  420
GFSRGASMYR GVTRHHQHGR WQARIGRVAG NKDLYLGTFS TQEEAAEAYD VAAIKFRGVN  480
AVTNFDITRY DVERIMASNT LLAGELARRN KEIDSNNEGG DYNTPALTNG ETMQPEANNG  540
NGSDWKMVLY QSPQQQSSVG AVESLEQKSL SNGSYRDPTF SMALQDLVGI DSVNSSQPMV  600
DESTKLGIHY SNPSSLVTSV SNSREGSPDK TGSSMLFAKP PLASKFISPA NGVSWFPSAQ  660
LRPAAISMAH LPLFAAWNDT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37750.1	1e-160	AP2 family protein