PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021284791.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family MIKC_MADS
Protein Properties Length: 322aa    MW: 36694.2 Da    PI: 4.9709
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021284791.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF885e-28958150
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                    krien++nrqvtfskRrng++KKA+ELS+LCd+++a+i+fs++g+l  +s
  XP_021284791.1  9 KRIENNTNRQVTFSKRRNGLIKKAYELSILCDIDIALIMFSPSGRLSHFS 58
                    79********************************************9997 PP
2K-box20.52e-081241901278
           K-box  12 akaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqie 78 
                     ++ e  qqe+ +L+ ++++ ++++R +  + L   s+ eL++ e++L + l +i ++K+ ll ++++
  XP_021284791.1 124 SDFEVIQQEIVRLQPQLQMAEEQLRAYEPDLLRLTSMGELESCEKHLVDTLANIVQRKEYLLSNHLS 190
                     566789********************************************************99986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    
MGRVKLEIKR IENNTNRQVT FSKRRNGLIK KAYELSILCD IDIALIMFSP SGRLSHFSGR  60
RRIEDVFTRY INLPDQEREH ALIFPDQIRH PDIQNKEYLL RILQQLRSEN DIALQLANPA  120
SFSSDFEVIQ QEIVRLQPQL QMAEEQLRAY EPDLLRLTSM GELESCEKHL VDTLANIVQR  180
KEYLLSNHLS SYHPSPIQQG LPPSFDNEVV NWLPDGGQNQ SQIFDASSAL NQLRDLSSTV  240
YDPLLQGSIS NPNGEDFQPW PQPFVSTPTL YSHVQHGMVG PEMTEMMANE QMEIPGNNSS  300
HGQAAENGGS NYENRVPQLN GQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22130.11e-137MIKC_MADS family protein