PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021282356.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

MYB_related

Protein Properties

Length: 1153aa MW: 128732 Da PI: 9.6097

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021282356.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	24.8	5e-08	45	80	3	40
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40 W + E e++++a +++G++ Wk++a+ + +R+ +++ XP_021282356.1 45 QWNKVEIERFYKAYREYGKD-WKKVAAAVR-NRSTEMV 80 6***************99.*****.99876 PP

Sequence ? help Back to Top
Protein Sequence Length: 1153 aa Download sequence
MAPTRKSKSV NKRYSSVYEV SPDKDAGNSS KSKPKKKLAD KLGSQWNKVE IERFYKAYRE 60 YGKDWKKVAA AVRNRSTEMV EALYLMNRAY LSLPDGTASV IGLIAMMTDH YSVLGGSDCE 120 RESNEPSEIP QKAQKRKRAK VHLGSSKEDV VQPLSIASSQ GCLSLLKKAG LNGIHPHAVR 180 KRTPRVPVSY SYRRDDTESD IPPNKRVKKS ETDDNDDEHV AALTLTGALQ RGGSPQVSQT 240 PYKRAECKRS SPVESYDRMS PQPETTKAKL DDSSYECWME GRPRGMEPVI GTHARDADPL 300 MDMEVVVTIE GHRKGKKFYR KKMKVEETKN NLSDDGGEAC SGTDERIRGS TLKGKVDMEI 360 SSAKSEQLSP WSQRKRSNKK LVFGDESSSI DALLTLANLS TSMLPTSIME SGHHRDKIKH 420 LGPKEKVLNS ITGVEDATSR KLKVGRNSAM EDNVVSEAKL QPEPTNNSWK RKRKSFSSKL 480 QISNAEAPMD SHLRQSFDKE DMAEEQNKYL TKGKCGGQSS VQSRQWKSFR VSEDSPTNDD 540 PKMAGIDSVV LTSQVPVPNP VSLATKHQSR RKMNLKRALL STDRSSSKCT LKNQPNKQSV 600 TQDRLKEQLS SCLSSNLARR WYSFEWFYSA IDYAWFAKRE FVEYLNHVGL GHVPRLTRVE 660 WGVIRSSLGK PRRFSERFLH EEREKLKQYR ESVRQHYSQL RVGTREGLPT DLAYPLSVGQ 720 RVIAIHPKTR EVHDGKVLTV DHDRCRVQFD SPELGVEFVT DVDCMPLNPL ENMPEALRRQ 780 NLAFDKFSMT PKQSQVNSHS DFGGSMVFTS TGRLENGTSP VNISANQIKV DANCNILHAK 840 AAVPHVVSAH QAAYGQPLTM AHIQGRETAI RAMSELNGAL DKKEALLMEL RNMNNDISEN 900 RNGESCLKDS EPFKKHIATV LVELKEASGQ ASSALLNLRQ RNAYPTNLLS SWQKPPTNSN 960 FFGGLTSSVD SSHVSPESGS GVGDIVQGSR LKAHAMVDAA IKAMSSMKEG EDAFMRIGEA 1020 LDSLDKRQFT SDIRMPLMKS REQENGSMGY RSHLVSSTSK PVAAVWATNP KSQEACDKNE 1080 EQVPSELIAS CVATLLMIET CTERQYPPAD VAQIIDSAVT SLHPCFPQNL PIYREIQMCM 1140 GRIKTQILAL IPT

Sequence ? help Back to Top

Protein Sequence Length: 1153 aa Download sequence

MAPTRKSKSV NKRYSSVYEV SPDKDAGNSS KSKPKKKLAD KLGSQWNKVE IERFYKAYRE  60
YGKDWKKVAA AVRNRSTEMV EALYLMNRAY LSLPDGTASV IGLIAMMTDH YSVLGGSDCE  120
RESNEPSEIP QKAQKRKRAK VHLGSSKEDV VQPLSIASSQ GCLSLLKKAG LNGIHPHAVR  180
KRTPRVPVSY SYRRDDTESD IPPNKRVKKS ETDDNDDEHV AALTLTGALQ RGGSPQVSQT  240
PYKRAECKRS SPVESYDRMS PQPETTKAKL DDSSYECWME GRPRGMEPVI GTHARDADPL  300
MDMEVVVTIE GHRKGKKFYR KKMKVEETKN NLSDDGGEAC SGTDERIRGS TLKGKVDMEI  360
SSAKSEQLSP WSQRKRSNKK LVFGDESSSI DALLTLANLS TSMLPTSIME SGHHRDKIKH  420
LGPKEKVLNS ITGVEDATSR KLKVGRNSAM EDNVVSEAKL QPEPTNNSWK RKRKSFSSKL  480
QISNAEAPMD SHLRQSFDKE DMAEEQNKYL TKGKCGGQSS VQSRQWKSFR VSEDSPTNDD  540
PKMAGIDSVV LTSQVPVPNP VSLATKHQSR RKMNLKRALL STDRSSSKCT LKNQPNKQSV  600
TQDRLKEQLS SCLSSNLARR WYSFEWFYSA IDYAWFAKRE FVEYLNHVGL GHVPRLTRVE  660
WGVIRSSLGK PRRFSERFLH EEREKLKQYR ESVRQHYSQL RVGTREGLPT DLAYPLSVGQ  720
RVIAIHPKTR EVHDGKVLTV DHDRCRVQFD SPELGVEFVT DVDCMPLNPL ENMPEALRRQ  780
NLAFDKFSMT PKQSQVNSHS DFGGSMVFTS TGRLENGTSP VNISANQIKV DANCNILHAK  840
AAVPHVVSAH QAAYGQPLTM AHIQGRETAI RAMSELNGAL DKKEALLMEL RNMNNDISEN  900
RNGESCLKDS EPFKKHIATV LVELKEASGQ ASSALLNLRQ RNAYPTNLLS SWQKPPTNSN  960
FFGGLTSSVD SSHVSPESGS GVGDIVQGSR LKAHAMVDAA IKAMSSMKEG EDAFMRIGEA  1020
LDSLDKRQFT SDIRMPLMKS REQENGSMGY RSHLVSSTSK PVAAVWATNP KSQEACDKNE  1080
EQVPSELIAS CVATLLMIET CTERQYPPAD VAQIIDSAVT SLHPCFPQNL PIYREIQMCM  1140
GRIKTQILAL IPT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21430.2	0.0	MYB_related family protein