PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021282355.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

MYB_related

Protein Properties

Length: 1157aa MW: 129062 Da PI: 9.6097

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021282355.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	24.8	5e-08	45	80	3	40
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40 W + E e++++a +++G++ Wk++a+ + +R+ +++ XP_021282355.1 45 QWNKVEIERFYKAYREYGKD-WKKVAAAVR-NRSTEMV 80 6***************99.*****.99876 PP

Sequence ? help Back to Top
Protein Sequence Length: 1157 aa Download sequence
MAPTRKSKSV NKRYSSVYEV SPDKDAGNSS KSKPKKKLAD KLGSQWNKVE IERFYKAYRE 60 YGKDWKKVAA AVRNRSTEMV EALYLMNRAY LSLPDGTASV IGLIAMMTDH YSVLGGSDCE 120 RESNEPSEIP QKAQKRKRAK VHLGSSKEDV VQPLSIASSQ GCLSLLKKAG LNGIHPHAVR 180 KRTPRVPVSY SYRRDDTESD IPPNKRVKKS ETDDNDDEHV AALTLTGALQ RGGSPQVSQT 240 PYKRAECKRS SPVESYDRMS PQPETTKAKL DDSSYECWME GRPRGMEPVI GTHARDADPL 300 MDMEVVVTIE GHRKGKKFYR KKMKVEETKN NLSDDGGEAC SGTDERIRGS TLKGKVDMEI 360 SSAKSEQLSP WSQRKRSNKK LVFGDESSSI DALLTLANLS TSMLPTSIME SAASTGHHRD 420 KIKHLGPKEK VLNSITGVED ATSRKLKVGR NSAMEDNVVS EAKLQPEPTN NSWKRKRKSF 480 SSKLQISNAE APMDSHLRQS FDKEDMAEEQ NKYLTKGKCG GQSSVQSRQW KSFRVSEDSP 540 TNDDPKMAGI DSVVLTSQVP VPNPVSLATK HQSRRKMNLK RALLSTDRSS SKCTLKNQPN 600 KQSVTQDRLK EQLSSCLSSN LARRWYSFEW FYSAIDYAWF AKREFVEYLN HVGLGHVPRL 660 TRVEWGVIRS SLGKPRRFSE RFLHEEREKL KQYRESVRQH YSQLRVGTRE GLPTDLAYPL 720 SVGQRVIAIH PKTREVHDGK VLTVDHDRCR VQFDSPELGV EFVTDVDCMP LNPLENMPEA 780 LRRQNLAFDK FSMTPKQSQV NSHSDFGGSM VFTSTGRLEN GTSPVNISAN QIKVDANCNI 840 LHAKAAVPHV VSAHQAAYGQ PLTMAHIQGR ETAIRAMSEL NGALDKKEAL LMELRNMNND 900 ISENRNGESC LKDSEPFKKH IATVLVELKE ASGQASSALL NLRQRNAYPT NLLSSWQKPP 960 TNSNFFGGLT SSVDSSHVSP ESGSGVGDIV QGSRLKAHAM VDAAIKAMSS MKEGEDAFMR 1020 IGEALDSLDK RQFTSDIRMP LMKSREQENG SMGYRSHLVS STSKPVAAVW ATNPKSQEAC 1080 DKNEEQVPSE LIASCVATLL MIETCTERQY PPADVAQIID SAVTSLHPCF PQNLPIYREI 1140 QMCMGRIKTQ ILALIPT

Sequence ? help Back to Top

Protein Sequence Length: 1157 aa Download sequence

MAPTRKSKSV NKRYSSVYEV SPDKDAGNSS KSKPKKKLAD KLGSQWNKVE IERFYKAYRE  60
YGKDWKKVAA AVRNRSTEMV EALYLMNRAY LSLPDGTASV IGLIAMMTDH YSVLGGSDCE  120
RESNEPSEIP QKAQKRKRAK VHLGSSKEDV VQPLSIASSQ GCLSLLKKAG LNGIHPHAVR  180
KRTPRVPVSY SYRRDDTESD IPPNKRVKKS ETDDNDDEHV AALTLTGALQ RGGSPQVSQT  240
PYKRAECKRS SPVESYDRMS PQPETTKAKL DDSSYECWME GRPRGMEPVI GTHARDADPL  300
MDMEVVVTIE GHRKGKKFYR KKMKVEETKN NLSDDGGEAC SGTDERIRGS TLKGKVDMEI  360
SSAKSEQLSP WSQRKRSNKK LVFGDESSSI DALLTLANLS TSMLPTSIME SAASTGHHRD  420
KIKHLGPKEK VLNSITGVED ATSRKLKVGR NSAMEDNVVS EAKLQPEPTN NSWKRKRKSF  480
SSKLQISNAE APMDSHLRQS FDKEDMAEEQ NKYLTKGKCG GQSSVQSRQW KSFRVSEDSP  540
TNDDPKMAGI DSVVLTSQVP VPNPVSLATK HQSRRKMNLK RALLSTDRSS SKCTLKNQPN  600
KQSVTQDRLK EQLSSCLSSN LARRWYSFEW FYSAIDYAWF AKREFVEYLN HVGLGHVPRL  660
TRVEWGVIRS SLGKPRRFSE RFLHEEREKL KQYRESVRQH YSQLRVGTRE GLPTDLAYPL  720
SVGQRVIAIH PKTREVHDGK VLTVDHDRCR VQFDSPELGV EFVTDVDCMP LNPLENMPEA  780
LRRQNLAFDK FSMTPKQSQV NSHSDFGGSM VFTSTGRLEN GTSPVNISAN QIKVDANCNI  840
LHAKAAVPHV VSAHQAAYGQ PLTMAHIQGR ETAIRAMSEL NGALDKKEAL LMELRNMNND  900
ISENRNGESC LKDSEPFKKH IATVLVELKE ASGQASSALL NLRQRNAYPT NLLSSWQKPP  960
TNSNFFGGLT SSVDSSHVSP ESGSGVGDIV QGSRLKAHAM VDAAIKAMSS MKEGEDAFMR  1020
IGEALDSLDK RQFTSDIRMP LMKSREQENG SMGYRSHLVS STSKPVAAVW ATNPKSQEAC  1080
DKNEEQVPSE LIASCVATLL MIETCTERQY PPADVAQIID SAVTSLHPCF PQNLPIYREI  1140
QMCMGRIKTQ ILALIPT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21430.2	0.0	MYB_related family protein