PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021282353.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

MYB_related

Protein Properties

Length: 1161aa MW: 129533 Da PI: 9.4163

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021282353.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	24.8	5e-08	24	59	3	40
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40 W + E e++++a +++G++ Wk++a+ + +R+ +++ XP_021282353.1 24 QWNKVEIERFYKAYREYGKD-WKKVAAAVR-NRSTEMV 59 6***************99.*****.99876 PP

Sequence ? help Back to Top
Protein Sequence Length: 1161 aa Download sequence
MKSLLIKMPE IQAKKKLADK LGSQWNKVEI ERFYKAYREY GKDWKKVAAA VRNRSTEMVE 60 ALYLMNRAYL SLPDGTASVI GLIAMMTDHY SVLGGSDCER ESNEPSEIPQ KAQKRKRAKV 120 HLGSSKEDVV QPLSIASSQG CLSLLKKAGL NGIHPHAVRK RTPRVPVSYS YRRDDTESDI 180 PPNKRVKKSE TDDNDDEHVA ALTLTGALQR GGSPQVSQTP YKRAECKRSS PVESYDRMSP 240 QPETTKAKLD DSSYECWMEG RPRGMEPVIG THARDADPLM DMEVVVTIEG HRKGKKFYRK 300 KMKVEETKNN LSDDGGEACS GTDERIRGST LKGKVDMEIS SAKSEQLSPW SQRKRSNKKL 360 VFGDESSSID ALLTLANLST SMLPTSIMES GLESSVKLKE NRITLESVDK SSAPEAASTG 420 HHRDKIKHLG PKEKVLNSIT GVEDATSRKL KVGRNSAMED NVVSEAKLQP EPTNNSWKRK 480 RKSFSSKLQI SNAEAPMDSH LRQSFDKEDM AEEQNKYLTK GKCGGQSSVQ SRQWKSFRVS 540 EDSPTNDDPK MAGIDSVVLT SQVPVPNPVS LATKHQSRRK MNLKRALLST DRSSSKCTLK 600 NQPNKQSVTQ DRLKEQLSSC LSSNLARRWY SFEWFYSAID YAWFAKREFV EYLNHVGLGH 660 VPRLTRVEWG VIRSSLGKPR RFSERFLHEE REKLKQYRES VRQHYSQLRV GTREGLPTDL 720 AYPLSVGQRV IAIHPKTREV HDGKVLTVDH DRCRVQFDSP ELGVEFVTDV DCMPLNPLEN 780 MPEALRRQNL AFDKFSMTPK QSQVNSHSDF GGSMVFTSTG RLENGTSPVN ISANQIKVDA 840 NCNILHAKAA VPHVVSAHQA AYGQPLTMAH IQGRETAIRA MSELNGALDK KEALLMELRN 900 MNNDISENRN GESCLKDSEP FKKHIATVLV ELKEASGQAS SALLNLRQRN AYPTNLLSSW 960 QKPPTNSNFF GGLTSSVDSS HVSPESGSGV GDIVQGSRLK AHAMVDAAIK AMSSMKEGED 1020 AFMRIGEALD SLDKRQFTSD IRMPLMKSRE QENGSMGYRS HLVSSTSKPV AAVWATNPKS 1080 QEACDKNEEQ VPSELIASCV ATLLMIETCT ERQYPPADVA QIIDSAVTSL HPCFPQNLPI 1140 YREIQMCMGR IKTQILALIP T

Sequence ? help Back to Top

Protein Sequence Length: 1161 aa Download sequence

MKSLLIKMPE IQAKKKLADK LGSQWNKVEI ERFYKAYREY GKDWKKVAAA VRNRSTEMVE  60
ALYLMNRAYL SLPDGTASVI GLIAMMTDHY SVLGGSDCER ESNEPSEIPQ KAQKRKRAKV  120
HLGSSKEDVV QPLSIASSQG CLSLLKKAGL NGIHPHAVRK RTPRVPVSYS YRRDDTESDI  180
PPNKRVKKSE TDDNDDEHVA ALTLTGALQR GGSPQVSQTP YKRAECKRSS PVESYDRMSP  240
QPETTKAKLD DSSYECWMEG RPRGMEPVIG THARDADPLM DMEVVVTIEG HRKGKKFYRK  300
KMKVEETKNN LSDDGGEACS GTDERIRGST LKGKVDMEIS SAKSEQLSPW SQRKRSNKKL  360
VFGDESSSID ALLTLANLST SMLPTSIMES GLESSVKLKE NRITLESVDK SSAPEAASTG  420
HHRDKIKHLG PKEKVLNSIT GVEDATSRKL KVGRNSAMED NVVSEAKLQP EPTNNSWKRK  480
RKSFSSKLQI SNAEAPMDSH LRQSFDKEDM AEEQNKYLTK GKCGGQSSVQ SRQWKSFRVS  540
EDSPTNDDPK MAGIDSVVLT SQVPVPNPVS LATKHQSRRK MNLKRALLST DRSSSKCTLK  600
NQPNKQSVTQ DRLKEQLSSC LSSNLARRWY SFEWFYSAID YAWFAKREFV EYLNHVGLGH  660
VPRLTRVEWG VIRSSLGKPR RFSERFLHEE REKLKQYRES VRQHYSQLRV GTREGLPTDL  720
AYPLSVGQRV IAIHPKTREV HDGKVLTVDH DRCRVQFDSP ELGVEFVTDV DCMPLNPLEN  780
MPEALRRQNL AFDKFSMTPK QSQVNSHSDF GGSMVFTSTG RLENGTSPVN ISANQIKVDA  840
NCNILHAKAA VPHVVSAHQA AYGQPLTMAH IQGRETAIRA MSELNGALDK KEALLMELRN  900
MNNDISENRN GESCLKDSEP FKKHIATVLV ELKEASGQAS SALLNLRQRN AYPTNLLSSW  960
QKPPTNSNFF GGLTSSVDSS HVSPESGSGV GDIVQGSRLK AHAMVDAAIK AMSSMKEGED  1020
AFMRIGEALD SLDKRQFTSD IRMPLMKSRE QENGSMGYRS HLVSSTSKPV AAVWATNPKS  1080
QEACDKNEEQ VPSELIASCV ATLLMIETCT ERQYPPADVA QIIDSAVTSL HPCFPQNLPI  1140
YREIQMCMGR IKTQILALIP T

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21430.2	1e-159	MYB_related family protein