PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021282350.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

MYB_related

Protein Properties

Length: 1180aa MW: 131520 Da PI: 9.565

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021282350.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	24.8	5.1e-08	45	80	3	40
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40 W + E e++++a +++G++ Wk++a+ + +R+ +++ XP_021282350.1 45 QWNKVEIERFYKAYREYGKD-WKKVAAAVR-NRSTEMV 80 6***************99.*****.99876 PP

Sequence ? help Back to Top
Protein Sequence Length: 1180 aa Download sequence
MAPTRKSKSV NKRYSSVYEV SPDKDAGNSS KSKPKKKLAD KLGSQWNKVE IERFYKAYRE 60 YGKDWKKVAA AVRNRSTEMV EALYLMNRAY LSLPDGTASV IGLIAMMTDH YSVLGGSDCE 120 RESNEPSEIP QKAQKRKRAK VHLGSSKEDV VQPLSIASSQ GCLSLLKKAG LNGIHPHAVR 180 KRTPRVPVSY SYRRDDTESD IPPNKRVKKS ETDDNDDEHV AALTLTGALQ RGGSPQVSQT 240 PYKRAECKRS SPVESYDRMS PQPETTKAKL DDSSYECWME GRPRGMEPVI GTHARDADPL 300 MDMEVVVTIE GHRKGKKFYR KKMKVEETKN NLSDDGGEAC SGTDERIRGS TLKGKVDMEI 360 SSAKSEQLSP WSQRKRSNKK LVFGDESSSI DALLTLANLS TSMLPTSIME SGLESSVKLK 420 ENRITLESVD KSSAPEAAST GHHRDKIKHL GPKEKVLNSI TGVEDATSRK LKVGRNSAME 480 DNVVSEAKLQ PEPTNNSWKR KRKSFSSKIS NAEAPMDSHL RQSFDKEDMA EEQNKYLTKG 540 KCGGQSSVQS RQWKSFRVSE DSPTNDDPKM AGIDSVVLTS QVPVPNPVSL ATKHQSRRKM 600 NLKRALLSTD RSSSKCTLKN QPNKQSVTQD RLKEQLSSCL SSNLARRWYS FEWFYSAIDY 660 AWFAKREFVE YLNHVGLGHV PRLTRVEWGV IRSSLGKPRR FSERFLHEER EKLKQYRESV 720 RQHYSQLRVG TREGLPTDLA YPLSVGQRVI AIHPKTREVH DGKVLTVDHD RCRVQFDSPE 780 LGVEFVTDVD CMPLNPLENM PEALRRQNLA FDKFSMTPKQ SQVNSHSDFG GSMVFTSTGR 840 LENGTSPVNI SANQIKVDAN CNILHAKAAV PHVVSAHQAA YGQPLTMAHI QGRETAIRAM 900 SELNGALDKK EALLMELRNM NNDISENRNG ESCLKDSEPF KKHIATVLVE LKEASGQASS 960 ALLNLRQRNA YPTNLLSSWQ KPPTNSNFFG GLTSSVDSSH VSPESGSGVG DIVQGSRLKA 1020 HAMVDAAIKA MSSMKEGEDA FMRIGEALDS LDKRQFTSDI RMPLMKSREQ ENGSMGYRSH 1080 LVSSTSKPVA AVWATNPKSQ EACDKNEEQV PSELIASCVA TLLMIETCTE RQYPPADVAQ 1140 IIDSAVTSLH PCFPQNLPIY REIQMCMGRI KTQILALIPT

Sequence ? help Back to Top

Protein Sequence Length: 1180 aa Download sequence

MAPTRKSKSV NKRYSSVYEV SPDKDAGNSS KSKPKKKLAD KLGSQWNKVE IERFYKAYRE  60
YGKDWKKVAA AVRNRSTEMV EALYLMNRAY LSLPDGTASV IGLIAMMTDH YSVLGGSDCE  120
RESNEPSEIP QKAQKRKRAK VHLGSSKEDV VQPLSIASSQ GCLSLLKKAG LNGIHPHAVR  180
KRTPRVPVSY SYRRDDTESD IPPNKRVKKS ETDDNDDEHV AALTLTGALQ RGGSPQVSQT  240
PYKRAECKRS SPVESYDRMS PQPETTKAKL DDSSYECWME GRPRGMEPVI GTHARDADPL  300
MDMEVVVTIE GHRKGKKFYR KKMKVEETKN NLSDDGGEAC SGTDERIRGS TLKGKVDMEI  360
SSAKSEQLSP WSQRKRSNKK LVFGDESSSI DALLTLANLS TSMLPTSIME SGLESSVKLK  420
ENRITLESVD KSSAPEAAST GHHRDKIKHL GPKEKVLNSI TGVEDATSRK LKVGRNSAME  480
DNVVSEAKLQ PEPTNNSWKR KRKSFSSKIS NAEAPMDSHL RQSFDKEDMA EEQNKYLTKG  540
KCGGQSSVQS RQWKSFRVSE DSPTNDDPKM AGIDSVVLTS QVPVPNPVSL ATKHQSRRKM  600
NLKRALLSTD RSSSKCTLKN QPNKQSVTQD RLKEQLSSCL SSNLARRWYS FEWFYSAIDY  660
AWFAKREFVE YLNHVGLGHV PRLTRVEWGV IRSSLGKPRR FSERFLHEER EKLKQYRESV  720
RQHYSQLRVG TREGLPTDLA YPLSVGQRVI AIHPKTREVH DGKVLTVDHD RCRVQFDSPE  780
LGVEFVTDVD CMPLNPLENM PEALRRQNLA FDKFSMTPKQ SQVNSHSDFG GSMVFTSTGR  840
LENGTSPVNI SANQIKVDAN CNILHAKAAV PHVVSAHQAA YGQPLTMAHI QGRETAIRAM  900
SELNGALDKK EALLMELRNM NNDISENRNG ESCLKDSEPF KKHIATVLVE LKEASGQASS  960
ALLNLRQRNA YPTNLLSSWQ KPPTNSNFFG GLTSSVDSSH VSPESGSGVG DIVQGSRLKA  1020
HAMVDAAIKA MSSMKEGEDA FMRIGEALDS LDKRQFTSDI RMPLMKSREQ ENGSMGYRSH  1080
LVSSTSKPVA AVWATNPKSQ EACDKNEEQV PSELIASCVA TLLMIETCTE RQYPPADVAQ  1140
IIDSAVTSLH PCFPQNLPIY REIQMCMGRI KTQILALIPT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21430.2	0.0	MYB_related family protein