PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021281871.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

AP2

Protein Properties

Length: 801aa MW: 90424.8 Da PI: 4.6354

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021281871.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	39.6	1.3e-12	239	295	1	56
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 s y+GV++++++ r++A ++d s++ ++ k++++g ++ +e Aa+a++ a++kl+ge XP_021281871.1 239 STYRGVSRCRYSDRYEAFLWDNSDRSQKpKTVYIGGYDDEESAARAYDIAALKLWGE 295 56*****************66655568***********************997 PP
2	AP2	47	6.5e-15	337	389	1	56
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 s y+GV++++ ++W A+I k k ++lg+f+t+eeAa+a++ a+ +l+ge XP_021281871.1 337 SIYRGVSRNSDFKKWQARIGKG----KEiKGIYLGTFDTEEEAARAYDVAAIRLKGE 389 57**************9993....247***********************996 PP

Sequence ? help Back to Top
Protein Sequence Length: 801 aa Download sequence
MQLILLQNAL HDEILFCLCV SIDFXSKDFT SINCLWIIFS PINMSSPNFD GNPCLPISPM 60 SSPHPTQLAP QLEDSNTIFM NGTLDNLFQD HGLFPMAQPN YSPDAHQSFG FLSNFLQVNQ 120 MAASLPECPL LNETSLLLQN SPQFPYNMSQ GITNSFIPPT QPVEQNAKEM ISGSDEASNK 180 SSTVKRKQRN TLKNKKQTLE TSVKDNSSQS SGGSNENTSN KCRKRRQRRQ ERVFGVRSST 240 YRGVSRCRYS DRYEAFLWDN SDRSQKPKTV YIGGYDDEES AARAYDIAAL KLWGESAPLN 300 FPMCNYEKDL EEMQFYTKNE YFRSLRRKSR GFAKGASIYR GVSRNSDFKK WQARIGKGKE 360 IKGIYLGTFD TEEEAARAYD VAAIRLKGEN AITNFDINEY DLTSILQSTK LPIGKGASKL 420 LLQSSMDDVI RKKRNYTNEQ ITLVHFEEDD SGSSDPNLLS MHPPQFQNLL APEDPNMERQ 480 QNLHHSNQQD LSEILNSSLL HGLQNPDELR VNSTLLEGFN CFEGDMSNDE NLSFNFNVEF 540 PSNVDLGEKY NGGLERGIQE MQPFEFPQDI TAPENLQFTN PVLHQNPSFN FMQGYDQNLT 600 FPILQGHQNP VELQENLAGT GWRNHLETAR EFNGNYNGGT FPNEGIIEGC SAVGSAYDNF 660 YTELSGGVQQ MQRRENLQSL LALQGQDSHN LNQGHEDVTT QNLYHEPINF QTNPSSDYLF 720 SGNHNEEVSC NGIFEGLPRL MEIKNNYTGG HDDNFWDNRA AMVENPVPGT AGNGVNFFED 780 TEEDFLSSCL QALNELGPLS F

Sequence ? help Back to Top

Protein Sequence Length: 801 aa Download sequence

MQLILLQNAL HDEILFCLCV SIDFXSKDFT SINCLWIIFS PINMSSPNFD GNPCLPISPM  60
SSPHPTQLAP QLEDSNTIFM NGTLDNLFQD HGLFPMAQPN YSPDAHQSFG FLSNFLQVNQ  120
MAASLPECPL LNETSLLLQN SPQFPYNMSQ GITNSFIPPT QPVEQNAKEM ISGSDEASNK  180
SSTVKRKQRN TLKNKKQTLE TSVKDNSSQS SGGSNENTSN KCRKRRQRRQ ERVFGVRSST  240
YRGVSRCRYS DRYEAFLWDN SDRSQKPKTV YIGGYDDEES AARAYDIAAL KLWGESAPLN  300
FPMCNYEKDL EEMQFYTKNE YFRSLRRKSR GFAKGASIYR GVSRNSDFKK WQARIGKGKE  360
IKGIYLGTFD TEEEAARAYD VAAIRLKGEN AITNFDINEY DLTSILQSTK LPIGKGASKL  420
LLQSSMDDVI RKKRNYTNEQ ITLVHFEEDD SGSSDPNLLS MHPPQFQNLL APEDPNMERQ  480
QNLHHSNQQD LSEILNSSLL HGLQNPDELR VNSTLLEGFN CFEGDMSNDE NLSFNFNVEF  540
PSNVDLGEKY NGGLERGIQE MQPFEFPQDI TAPENLQFTN PVLHQNPSFN FMQGYDQNLT  600
FPILQGHQNP VELQENLAGT GWRNHLETAR EFNGNYNGGT FPNEGIIEGC SAVGSAYDNF  660
YTELSGGVQQ MQRRENLQSL LALQGQDSHN LNQGHEDVTT QNLYHEPINF QTNPSSDYLF  720
SGNHNEEVSC NGIFEGLPRL MEIKNNYTGG HDDNFWDNRA AMVENPVPGT AGNGVNFFED  780
TEEDFLSSCL QALNELGPLS F

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	224	229	KRRQRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51190.1	1e-78	AP2 family protein