PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021281414.1
Organism
Herrania umbratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
Family ARR-B
Protein Properties Length: 288aa    MW: 32912 Da    PI: 4.936
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021281414.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like72.36.9e-23218270151
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPkti...lelmkvkgLtlehvkSHLQ 51 
                     kpr+ Wt+eLH+ Fv av+qL G +kA+Pk+i   +++m+v gLt+++++SHLQ
  XP_021281414.1 218 KPRMIWTQELHDMFVAAVNQL-GRDKAVPKKIlerMQAMNVTGLTRANIASHLQ 270
                     79*******************.**********33335789************** PP
2Myb_DNA-binding38.42.8e-12220271146
                      TSSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHT....TTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGgg..tWktIartmg....kgRtlkqcksrwqk 46 
                      r+ WT+e+++ +v av+qlG +   +k+I ++m+    +g+t+ ++ s++q 
   XP_021281414.1 220 RMIWTQELHDMFVAAVNQLGRDkaVPKKILERMQamnvTGLTRANIASHLQV 271
                      567*****************99****************************96 PP
3Response_reg69.81.1e-23331391107
                     EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTT CS
    Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaG 93 
                     +livdD+++ + +l+ +l+k  y ev++++ +++al+ll+e +  +D++++D+ mp+mdGl+ll  i  e  +lp+++++a ++   + + +  G
  XP_021281414.1  33 ILIVDDSRTCLLVLEIMLRKLLY-EVTTCRLAKDALALLREDNerFDIVICDLHMPEMDGLKLLDIIGLEM-DLPVVMMSADDKRGVIMKGIIHG 125
                     8**********************.***************877777**********************6644.8********************** PP

                     ESEEEESS--HHHH CS
    Response_reg  94 akdflsKpfdpeel 107
                     a d+l+Kp+  + +
  XP_021281414.1 126 ACDYLVKPVRLDSI 139
                     ********998876 PP
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    
MDEQDIQISF LKNSCADKVN NSVVGEFPAG LKILIVDDSR TCLLVLEIML RKLLYEVTTC  60
RLAKDALALL REDNERFDIV ICDLHMPEMD GLKLLDIIGL EMDLPVVMMS ADDKRGVIMK  120
GIIHGACDYL VKPVRLDSIR FIWQHVLRKK RRGLGEFQQP GNNVNDRLLQ LEQAKDADQM  180
PARDKGSLPS LKRTREDEDE DEDEDDGEFS DEVTTTKKPR MIWTQELHDM FVAAVNQLGR  240
DKAVPKKILE RMQAMNVTGL TRANIASHLQ VTFYFHEIPL TGSRLFEN
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.14e-78ARR-B family protein