PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021281198.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

bHLH

Protein Properties

Length: 505aa MW: 55541.2 Da PI: 5.1087

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021281198.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	39.7	8.8e-13	359	405	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 +h e+Er+RR+++N++f Lr ++P+ + K++Ka+ L A+ YI +Lq XP_021281198.1 359 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAITYITDLQ 405 799*********************66......***************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 505 aa Download sequence
MGEKFWVNEE DKANVESALG TEACEFLISL ASKQVLSELV TPPPSDLGVQ QRLCQIVDGS 60 NWNYAIFWQV SSLKSGGSIL IWGDGRCRDP KLGGVGDAST SGDGKLEGVE NKNEVRKLVL 120 QKLHACFGGS EEDNYAAKLD GVSDMEMFYL TSMYFTFHCD ASYGPGESYK SSRSIWTSDV 180 NNCSDHYQSR SFLARSAGLQ TVVFIPVKSG VVELGSINLI PEEQNTVEMV SNVFGGSSSV 240 QTKTIPKIFG RELSLGGSKS RSISINFSPK VEDESGFTLE TYDVQALGSN QIYGNSSNGC 300 RSDDGEAKLF PQLLVGGFNA QARISGLEQP KDDSPSLPDE RKPRKRGRKP ANGREEPLNH 360 VEAERQRREK LNQRFYALRA VVPNISKMDK ASLLGDAITY ITDLQMKIRV LETEKEMVNN 420 TQRQLSMPDI DFQQGHEDAV VTLRCPLDAH PASRVIKALG ENEITAHESD VSTTDNDKVV 480 HTFTIRAPGG SAEQLKEKLL DSFSK

Sequence ? help Back to Top

Protein Sequence Length: 505 aa Download sequence

MGEKFWVNEE DKANVESALG TEACEFLISL ASKQVLSELV TPPPSDLGVQ QRLCQIVDGS  60
NWNYAIFWQV SSLKSGGSIL IWGDGRCRDP KLGGVGDAST SGDGKLEGVE NKNEVRKLVL  120
QKLHACFGGS EEDNYAAKLD GVSDMEMFYL TSMYFTFHCD ASYGPGESYK SSRSIWTSDV  180
NNCSDHYQSR SFLARSAGLQ TVVFIPVKSG VVELGSINLI PEEQNTVEMV SNVFGGSSSV  240
QTKTIPKIFG RELSLGGSKS RSISINFSPK VEDESGFTLE TYDVQALGSN QIYGNSSNGC  300
RSDDGEAKLF PQLLVGGFNA QARISGLEQP KDDSPSLPDE RKPRKRGRKP ANGREEPLNH  360
VEAERQRREK LNQRFYALRA VVPNISKMDK ASLLGDAITY ITDLQMKIRV LETEKEMVNN  420
TQRQLSMPDI DFQQGHEDAV VTLRCPLDAH PASRVIKALG ENEITAHESD VSTTDNDKVV  480
HTFTIRAPGG SAEQLKEKLL DSFSK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	341	349	RKPRKRGRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G16430.1	0.0	bHLH family protein