| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | HLH | 38.9 | 1.6e-12 | 320 | 366 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
HLH 4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55
+h e+Er+RR+++N++f Lr ++P+ + K++Ka+ L A+ YI ++q
AT4G16430.1 320 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLADAITYITDMQ 366
799***********************66......***************9998 PP
|
| Publications
? help Back to Top |
- Riechmann JL, et al.
Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes.
Science, 2000. 290(5499): p. 2105-10
[PMID:11118137] - Heim MA, et al.
The basic helix-loop-helix transcription factor family in plants: a genome-wide study of protein structure and functional diversity.
Mol. Biol. Evol., 2003. 20(5): p. 735-47
[PMID:12679534] - Toledo-Ortiz G,Huq E,Quail PH
The Arabidopsis basic/helix-loop-helix transcription factor family.
Plant Cell, 2003. 15(8): p. 1749-70
[PMID:12897250] - Yamada K, et al.
Empirical analysis of transcriptional activity in the Arabidopsis genome.
Science, 2003. 302(5646): p. 842-6
[PMID:14593172] - Bailey PC, et al.
Update on the basic helix-loop-helix transcription factor gene family in Arabidopsis thaliana.
Plant Cell, 2003. 15(11): p. 2497-502
[PMID:14600211] - Casson S,Spencer M,Walker K,Lindsey K
Laser capture microdissection for the analysis of gene expression during embryogenesis of Arabidopsis.
Plant J., 2005. 42(1): p. 111-23
[PMID:15773857] - Spencer MW,Casson SA,Lindsey K
Transcriptional profiling of the Arabidopsis embryo.
Plant Physiol., 2007. 143(2): p. 924-40
[PMID:17189330] - Ascencio-Ib
Global analysis of Arabidopsis gene expression uncovers a complex array of changes impacting pathogen response and cell cycle during geminivirus infection.
Plant Physiol., 2008. 148(1): p. 436-54
[PMID:18650403] - Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
Differentiation, 2010. 80(1): p. 1-8
[PMID:20219281] - Tominaga-Wada R,Iwata M,Nukumizu Y,Wada T
Analysis of IIId, IIIe and IVa group basic-helix-loop-helix proteins expressed in Arabidopsis root epidermis.
Plant Sci., 2011. 181(4): p. 471-8
[PMID:21889054] - Efroni I, et al.
Regulation of leaf maturation by chromatin-mediated modulation of cytokinin responses.
Dev. Cell, 2013. 24(4): p. 438-45
[PMID:23449474] - Sasaki-Sekimoto Y, et al.
Basic helix-loop-helix transcription factors JASMONATE-ASSOCIATED MYC2-LIKE1 (JAM1), JAM2, and JAM3 are negative regulators of jasmonate responses in Arabidopsis.
Plant Physiol., 2013. 163(1): p. 291-304
[PMID:23852442] - Song S, et al.
The bHLH subgroup IIId factors negatively regulate jasmonate-mediated plant defense and development.
PLoS Genet., 2013. 9(7): p. e1003653
[PMID:23935516] - Nakata M,Ohme-Takagi M
Two bHLH-type transcription factors, JA-ASSOCIATED MYC2-LIKE2 and JAM3, are transcriptional repressors and affect male fertility.
Plant Signal Behav, 2013. 8(12): p. e26473
[PMID:24056034] - Sasaki-Sekimoto Y,Saito H,Masuda S,Shirasu K,Ohta H
Comprehensive analysis of protein interactions between JAZ proteins and bHLH transcription factors that negatively regulate jasmonate signaling.
Plant Signal Behav, 2014. 9(1): p. e27639
[PMID:24394987] - Fonseca S, et al.
bHLH003, bHLH013 and bHLH017 are new targets of JAZ repressors negatively regulating JA responses.
PLoS ONE, 2014. 9(1): p. e86182
[PMID:24465948] - Ezer D, et al.
The G-Box Transcriptional Regulatory Code in Arabidopsis.
Plant Physiol., 2017. 175(2): p. 628-640
[PMID:28864470]
|
