PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_021280438.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
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Family | ERF | ||||||||
Protein Properties | Length: 224aa MW: 25327.2 Da PI: 5.2127 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59 | 1.1e-18 | 97 | 146 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GVr ++ +g+++AeIrd + ng r++lg+f++ae Aa a+++a+ +++g XP_021280438.1 97 YRGVRKRP-WGKYAAEIRDSTRNG--VRVWLGTFDSAEAAALAYDQAAFSMRG 146 9*******.**********44465..*************************98 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 224 aa Download sequence |
MNNLTPDMDS CFFQHSTPEF SPESSSGSPE PCSCWDDLLL HHNSIPFNFN DSEEMLWMDL 60 LAQGPKESSE SNSTDGLKEE EVTSDAKHEE PKKEKTYRGV RKRPWGKYAA EIRDSTRNGV 120 RVWLGTFDSA EAAALAYDQA AFSMRGSLAT LNFPIEVVRE SLQDIKYRCE EGCSPVVALK 180 KRHSLRKRSK NKKSKQNEAA RQQQNLVVLE DLGADYLEQL LSSC |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 185 | 193 | LRKRSKNKK |
2 | 187 | 193 | KRSKNKK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G23240.1 | 7e-49 | ERF family protein |