PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021279340.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

MYB_related

Protein Properties

Length: 621aa MW: 69151.4 Da PI: 10.3547

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021279340.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	27.4	7.9e-09	10	42	2	35
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgR 35 ++W t E++ll++av+++G+++W++Ia +++ +R XP_021279340.1 10 QPWGTLEELLLACAVNRHGTKSWDSIALELQ-HR 42 79**************************999.66 PP

Sequence ? help Back to Top
Protein Sequence Length: 621 aa Download sequence
MARAHETSAQ PWGTLEELLL ACAVNRHGTK SWDSIALELQ HRRISSSFLL PSFTPQLCKD 60 KFFDLKRRFI SPNDAASSSS LVDQLRRIRV EELRREVQRR DVSIVSLELK VKRLVEERDR 120 SLKEEADLDD HQNKPSPEIV AGEPAVGDDS GDLDDRSFNE SNSTSQKPEE ATTTTVIIKD 180 EQNDVEAVEE VGGEKKAQVK TQSSGPGTGN EPDPVRTGKG PGNERVNGEE RDNKKQTSDV 240 QSSASLSKKK RRRFTSGDGS SSAEEREGDE SSPAMKRASA VKPESLVRLL GIIRSHRLGS 300 AFGRCQRSQE SERYKMLVRQ HMDLERIESR LDEGVYSDCS AKFFRDLLLL FNNIIIFHRK 360 NSPEHIAAQE LRALVLKEIS DELRKQPPQP ATLKPGLDQP PESLPKPNKS STIVACSKRS 420 SIKALTQNAS RRGDKKERKV GEKPKATEKK VNTSYFGGID DNGIRKKRSK ERAVSGRRNS 480 LRTSSKSGET KHEYGGNELS SHDALDLKVD KKENMARKKE GAASFLKRMK QNSPSGATDD 540 EDSENGSKDG KEGKGRGRKR DVKRVTRSSG GRGAREESGR VKRGVGRPPK RATAADLRPR 600 EGETTLRMRR EWGVVGGLET V

Sequence ? help Back to Top

Protein Sequence Length: 621 aa Download sequence

MARAHETSAQ PWGTLEELLL ACAVNRHGTK SWDSIALELQ HRRISSSFLL PSFTPQLCKD  60
KFFDLKRRFI SPNDAASSSS LVDQLRRIRV EELRREVQRR DVSIVSLELK VKRLVEERDR  120
SLKEEADLDD HQNKPSPEIV AGEPAVGDDS GDLDDRSFNE SNSTSQKPEE ATTTTVIIKD  180
EQNDVEAVEE VGGEKKAQVK TQSSGPGTGN EPDPVRTGKG PGNERVNGEE RDNKKQTSDV  240
QSSASLSKKK RRRFTSGDGS SSAEEREGDE SSPAMKRASA VKPESLVRLL GIIRSHRLGS  300
AFGRCQRSQE SERYKMLVRQ HMDLERIESR LDEGVYSDCS AKFFRDLLLL FNNIIIFHRK  360
NSPEHIAAQE LRALVLKEIS DELRKQPPQP ATLKPGLDQP PESLPKPNKS STIVACSKRS  420
SIKALTQNAS RRGDKKERKV GEKPKATEKK VNTSYFGGID DNGIRKKRSK ERAVSGRRNS  480
LRTSSKSGET KHEYGGNELS SHDALDLKVD KKENMARKKE GAASFLKRMK QNSPSGATDD  540
EDSENGSKDG KEGKGRGRKR DVKRVTRSSG GRGAREESGR VKRGVGRPPK RATAADLRPR  600
EGETTLRMRR EWGVVGGLET V

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	248	253	KKKRRR
2	435	470	KKERKVGEKPKATEKKVNTSYFGGIDDNGIRKKRSK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G44430.1	3e-40	MYB_related family protein