PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021278972.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

AP2

Protein Properties

Length: 544aa MW: 60129 Da PI: 6.5125

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021278972.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	47	6.2e-15	167	226	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d + g ++ ++++lg ++ +e+Aa+a++ a++k++g XP_021278972.1 167 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqsRKgRQVYLGGYDKEEKAARAYDLAALKYWG 226 57*****************666664477446***********************98 PP
2	AP2	47.1	5.9e-15	271	320	3	55
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GV+++++ grW A+I + +k +lg+f t+eeAa+a++ a+ k++g XP_021278972.1 271 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTEEEAAEAYDIAAIKFRG 320 9*************988532...5**********************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 544 aa Download sequence
MGSMNSNNWL SFPLSPTNSS LPTHLHSSQS HQFNLGLVND NMENPFQAQE WNLINTHDTS 60 EIPKVADFLG VSKSESPSLD LVAFNEIHQA NDSDYSFQSN SIVPVQNAVV AANNNYEFQE 120 NANNLQSLTL SMGSGKGSTC ETSGENSTNT VEAPPRRTLD TFGQRTSIYR GVTRHRWTGR 180 YEAHLWDNSC RREGQSRKGR QVYLGGYDKE EKAARAYDLA ALKYWGTSTT TNFPISNYEK 240 ELEEMKHMTR QEFVAAIRRK SSGFSRGASM YRGVTRHHQH GRWQARIGRV AGNKDLYLGT 300 FSTEEEAAEA YDIAAIKFRG LNAVTNFDMS RYDVKAILES NTLPIGGGAA KRLKEAQTLE 360 SSRKREEMIA LGSSFQYGSS SSSRLQAYPL MQTPFEQPQP LLTLQNQDMS PYAQDTSSFH 420 QNYIQTQLQL HQQSGSYLHQ PSQNSQFYNN HIQNNPALFH GLMGMCCSSS VVDNNGSSNG 480 SYSAGYLGNG IGMASNSTAG NAVGSTEELA LVKVDYDMPS GGYGGWSGDS VQGSNAGVFS 540 MWND

Sequence ? help Back to Top

Protein Sequence Length: 544 aa Download sequence

MGSMNSNNWL SFPLSPTNSS LPTHLHSSQS HQFNLGLVND NMENPFQAQE WNLINTHDTS  60
EIPKVADFLG VSKSESPSLD LVAFNEIHQA NDSDYSFQSN SIVPVQNAVV AANNNYEFQE  120
NANNLQSLTL SMGSGKGSTC ETSGENSTNT VEAPPRRTLD TFGQRTSIYR GVTRHRWTGR  180
YEAHLWDNSC RREGQSRKGR QVYLGGYDKE EKAARAYDLA ALKYWGTSTT TNFPISNYEK  240
ELEEMKHMTR QEFVAAIRRK SSGFSRGASM YRGVTRHHQH GRWQARIGRV AGNKDLYLGT  300
FSTEEEAAEA YDIAAIKFRG LNAVTNFDMS RYDVKAILES NTLPIGGGAA KRLKEAQTLE  360
SSRKREEMIA LGSSFQYGSS SSSRLQAYPL MQTPFEQPQP LLTLQNQDMS PYAQDTSSFH  420
QNYIQTQLQL HQQSGSYLHQ PSQNSQFYNN HIQNNPALFH GLMGMCCSSS VVDNNGSSNG  480
SYSAGYLGNG IGMASNSTAG NAVGSTEELA LVKVDYDMPS GGYGGWSGDS VQGSNAGVFS  540
MWND

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51190.1	0.0	AP2 family protein