PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021278944.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

MYB

Protein Properties

Length: 330aa MW: 37320.3 Da PI: 7.6142

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021278944.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	52.8	9.1e-17	14	62	1	48
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd +l+++++++G+g +W + +++ g++R++k+c++rw++yl XP_021278944.1 14 KGPWSPEEDSKLKEYIEKYGTGgNWIALPQKAGLKRCGKSCRLRWLNYL 62 79*********************************************97 PP
2	Myb_DNA-binding	40.8	5.1e-13	69	111	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g +T eEd ++ +++ G++ W+ Ia+ ++ gRt++++k++w++ XP_021278944.1 69 GEFTDEEDRIICSLFASIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111 78*****************.*****.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 330 aa Download sequence
MGRAPCCDKA NVKKGPWSPE EDSKLKEYIE KYGTGGNWIA LPQKAGLKRC GKSCRLRWLN 60 YLRPNIKHGE FTDEEDRIIC SLFASIGSRW SIIAAQLPGR TDNDIKNYWN TKLKKKLMAM 120 TAQSQRKPPP FPSSHHTXPV SSQSLSSLYK DCSTSYYSTP NRSFTAFEPM SSVQSDLLNN 180 NSNTTNFATN SSLIHTPESL VSHMQYYPVK ENFLMFGSEP SCSSSDGSCS QISYGREIKQ 240 EDMSFQGFGA STGYEDNHKF MLDYGTNNGG ANVTQWTEKP SGYYGECSLD YDLEDVKRLI 300 SSSSTNNCCN NNNFFIDESK TQEKVMYYYY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G57620.1	4e-79	MYB family protein