PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021277493.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

HSF

Protein Properties

Length: 397aa MW: 44643.6 Da PI: 4.4565

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021277493.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	109	3.4e-34	53	144	2	102
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 Fl+k++e++ed++++ ++sws+ nsf+v+d+++f++++Lp+yFkhsnf+SF+RQLn+YgF+kv+ ++ weF+ + F g+k+ll++ XP_021277493.1 53 FLTKTFEMVEDPSTDLVVSWSKARNSFIVWDSHKFSTTLLPRYFKHSNFSSFIRQLNTYGFRKVDPDR---------WEFASEGFLGGQKHLLKT 138 9**************************************************************999.........************** PP XXXXXX CS HSF_DNA-bind 97 ikrkks 102 ikr+++ XP_021277493.1 139 IKRRRN 144 *986 PP

Sequence ? help Back to Top
Protein Sequence Length: 397 aa Download sequence
MEGVVIKDEE TVTFAAGTAG LSSSSSSSAS SSSSSNVTPQ PMEGLNEVGP PPFLTKTFEM 60 VEDPSTDLVV SWSKARNSFI VWDSHKFSTT LLPRYFKHSN FSSFIRQLNT YGFRKVDPDR 120 WEFASEGFLG GQKHLLKTIK RRRNILQSSQ QQGEGGCVEL GQFGLEGELE RLRRDRSVLL 180 AEIVRLRQQQ QHSRDQIVAV DGRLQSTERK QQQIMTFLAK ALRNPTFFQQ FAQKKQMQGV 240 EIGRKRRLTA NPSIENLQEE AIPVVVDTEQ VLNYANQEQE ELATIESEIE TFFSSALDNE 300 SSSEIKDPIT SSVPTSGGAN LGSVNDTIWE EFISDDLIAS ELEEEIVVSD QAEVDVEVED 360 LAVNPEDWGD DLRDLVDQMG YLRRTNGQKF IRNLFNS

Sequence ? help Back to Top

Protein Sequence Length: 397 aa Download sequence

MEGVVIKDEE TVTFAAGTAG LSSSSSSSAS SSSSSNVTPQ PMEGLNEVGP PPFLTKTFEM  60
VEDPSTDLVV SWSKARNSFI VWDSHKFSTT LLPRYFKHSN FSSFIRQLNT YGFRKVDPDR  120
WEFASEGFLG GQKHLLKTIK RRRNILQSSQ QQGEGGCVEL GQFGLEGELE RLRRDRSVLL  180
AEIVRLRQQQ QHSRDQIVAV DGRLQSTERK QQQIMTFLAK ALRNPTFFQQ FAQKKQMQGV  240
EIGRKRRLTA NPSIENLQEE AIPVVVDTEQ VLNYANQEQE ELATIESEIE TFFSSALDNE  300
SSSEIKDPIT SSVPTSGGAN LGSVNDTIWE EFISDDLIAS ELEEEIVVSD QAEVDVEVED  360
LAVNPEDWGD DLRDLVDQMG YLRRTNGQKF IRNLFNS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	136	142	LKTIKRR
2	171	176	RLRRDR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G26150.1	1e-106	HSF family protein