PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021277057.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

CO-like

Protein Properties

Length: 368aa MW: 40035.9 Da PI: 6.6919

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021277057.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	26.1	1.8e-08	20	62	4	38
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg........Ht 38 ++C+++++ + +fC+ ++ lC +C + +H+g H+ XP_021277057.1 20 KTCDTCKSAAAAIFCRADSASLCLNCDSRIHSGnnklvssrHE 62 79*****************************877667766666 PP
2	zf-B_box	26.8	1.1e-08	64	109	3	42
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 ++C+ +e+ ++ C+ + lC +C +H+ H++vp+ XP_021277057.1 64 VWMCEVCEQAPAAVTCKADAAALCVTCDADIHSAnplarrHERVPV 109 689*****************************66899999999986 PP
3	CCT	69.8	7e-24	291	335	1	45
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqae 45 Rea++lRY+eKrk+RkFeK+irY+sRKa+AesRpR+KGrF+k+ae XP_021277057.1 291 REARVLRYREKRKNRKFEKTIRYASRKAYAESRPRIKGRFAKRAE 335 9*****************************************975 PP

Sequence ? help Back to Top
Protein Sequence Length: 368 aa Download sequence
MGIEIASVKG IPGGWGMAAK TCDTCKSAAA AIFCRADSAS LCLNCDSRIH SGNNKLVSSR 60 HERVWMCEVC EQAPAAVTCK ADAAALCVTC DADIHSANPL ARRHERVPVE PFFDSADSIV 120 KSSPFSYLVP TDHSGACQQE GVEPGSWLLP NPNLNSKHTG ETNQVKTGDL FFSEIDPFID 180 FEYQNSFQPH NNAAMDSVVP VQTKPATIPV INNENCFDID FCRSKLTALS YQTPSLSQSV 240 SSSSLEVGVV PDGNSLSEIS YPFGRTMTDP SVPISAATTN NQAPQAGGID REARVLRYRE 300 KRKNRKFEKT IRYASRKAYA ESRPRIKGRF AKRAEIDNEV DHMYNSPSAA ATAAAFMSDA 360 QYSVVPSF

Sequence ? help Back to Top

Protein Sequence Length: 368 aa Download sequence

MGIEIASVKG IPGGWGMAAK TCDTCKSAAA AIFCRADSAS LCLNCDSRIH SGNNKLVSSR  60
HERVWMCEVC EQAPAAVTCK ADAAALCVTC DADIHSANPL ARRHERVPVE PFFDSADSIV  120
KSSPFSYLVP TDHSGACQQE GVEPGSWLLP NPNLNSKHTG ETNQVKTGDL FFSEIDPFID  180
FEYQNSFQPH NNAAMDSVVP VQTKPATIPV INNENCFDID FCRSKLTALS YQTPSLSQSV  240
SSSSLEVGVV PDGNSLSEIS YPFGRTMTDP SVPISAATTN NQAPQAGGID REARVLRYRE  300
KRKNRKFEKT IRYASRKAYA ESRPRIKGRF AKRAEIDNEV DHMYNSPSAA ATAAAFMSDA  360
QYSVVPSF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G57660.1	1e-127	CO-like family protein