PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021276892.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

bHLH

Protein Properties

Length: 522aa MW: 58461.1 Da PI: 7.8124

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021276892.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	33.2	9.6e-11	346	391	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h + Er+RR+++N++f Lr+llP+ +K +Ka++L A e++ sLq XP_021276892.1 346 HMMSERKRREKLNESFIALRSLLPSG-----TKKDKASVLCSAREHLTSLQ 391 8899*******************8.....7***************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 522 aa Download sequence
MDAVFHLDEA SRAEFLHLLM HSTGCTYICL WSYIHQANCL MCWDGCYNEE SSEPSALRLF 60 LQYRQVVFPL ESDNGLVPGF AFRNNRPYIE LGELELQNRV AHQTQRQFYG EAGIKTAVFM 120 GCRSGEIELG SSNVVQLNME MEMRGFFPED FSRRSPVGDQ LPQPQPTDPN RPSSSSSSLR 180 SLSTDSPDSS LIFTIPSASR PQVPTEATPS SLQAISSSIT DQHQQAMQAL SQIRSNIQLP 240 TLESEDAAMT RAILAVLTSP SSSSSSTSHQ PQQSQNLPYN DYQLNPKASA FKRYAASLLG 300 APTTPARASL RAQSMQKRAV LFYRKLNLAR REQQLRIRPT SNQLHHMMSE RKRREKLNES 360 FIALRSLLPS GTKKDKASVL CSAREHLTSL QAHIVELNRR NQLLEAQLLP SREAVGGEVT 420 GSSNERFSVR ITPVPESTSE QRIMDLRVSV RGERPIVDVL ITLLQFLKLD RNVCLLSIEA 480 NTHITESGSV NNVNLRLRIE GNGWDESTFQ EAVRRLVADL AQ

Sequence ? help Back to Top

Protein Sequence Length: 522 aa Download sequence

MDAVFHLDEA SRAEFLHLLM HSTGCTYICL WSYIHQANCL MCWDGCYNEE SSEPSALRLF  60
LQYRQVVFPL ESDNGLVPGF AFRNNRPYIE LGELELQNRV AHQTQRQFYG EAGIKTAVFM  120
GCRSGEIELG SSNVVQLNME MEMRGFFPED FSRRSPVGDQ LPQPQPTDPN RPSSSSSSLR  180
SLSTDSPDSS LIFTIPSASR PQVPTEATPS SLQAISSSIT DQHQQAMQAL SQIRSNIQLP  240
TLESEDAAMT RAILAVLTSP SSSSSSTSHQ PQQSQNLPYN DYQLNPKASA FKRYAASLLG  300
APTTPARASL RAQSMQKRAV LFYRKLNLAR REQQLRIRPT SNQLHHMMSE RKRREKLNES  360
FIALRSLLPS GTKKDKASVL CSAREHLTSL QAHIVELNRR NQLLEAQLLP SREAVGGEVT  420
GSSNERFSVR ITPVPESTSE QRIMDLRVSV RGERPIVDVL ITLLQFLKLD RNVCLLSIEA  480
NTHITESGSV NNVNLRLRIE GNGWDESTFQ EAVRRLVADL AQ

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	350	355	ERKRRE
2	351	356	RKRREK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56960.1	6e-78	bHLH family protein