PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID AT5G56960.1
Common NameBHLH41, EN51, MHM17.7
Organism
Arabidopsis thaliana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Family bHLH
Protein Properties Length: 466aa    MW: 52744.7 Da    PI: 9.7287
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
AT5G56960.1genomeTAIRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.49.7e-12290335555
                  HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  h + Er+RR+++N++f+ Lr+llP+      +K +Ka++L  A e ++sLq
  AT5G56960.1 290 HMISERKRREKLNESFQALRSLLPPG-----TKKDKASVLSIAREQLSSLQ 335
                  8899********************97.....8**************99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474597.85E-15283350IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.729285334IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.76E-10287339No hitNo description
Gene3DG3DSA:4.10.280.101.8E-13289353IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.8E-9290335IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.5E-13291340IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Plant Ontology ? help Back to Top
PO Term PO Category PO Description
PO:0000293anatomyguard cell
Sequence ? help Back to Top
Protein Sequence    Length: 466 aa     Download sequence    Send to blast
MMHLILSCSY LISMDGYYNE ASEEPSSSSS SGSLARSLFH EYRQSVIPLQ NGHVPSMAFM  60
NNLPYVEIRP QESQRLAFND TQRLFYQMKI EASLREWFPE DFNRKSSPAN SDYLRPPHYP  120
SSSSSSLSPN NISEYSSLLF PLIPKPSTTT EAVNVPVLPP LAPINMIHPQ HQEPLFRNRQ  180
REEEAMTQAI LAVLTGPSSP PSTSSSPQRK GRATAFKRYY SMISDRGRAP LPSVRKQSMM  240
TRAMSFYNRL NINQRERFTR ENATTHGEGS GGSGGGGRYT SGPSATQLQH MISERKRREK  300
LNESFQALRS LLPPGTKKDK ASVLSIAREQ LSSLQGEISK LLERNREVEA KLAGEREIEN  360
DLRPEERFNV RIRHIPESTS RERTLDLRVV LRGDIIRVDD LMIRLLEFLK QINNVSLVSI  420
EARTLARAEG DTSIVLVISL RLKIEGEWDE SAFQEAVRRV VADLAH
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1293298ERKRRE
2294299RKRREK
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO184239190.0
Expression AtlasAT5G56960-
AtGenExpressAT5G56960-
Cis-element ? help Back to Top
SourceLink
PlantRegMapAT5G56960.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Phenotype -- Mutation ? help Back to Top
Source ID
T-DNA ExpressAT5G56960
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0240350.0AB024035.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MHM17.
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_200506.10.0basic helix-loop-helix (bHLH) DNA-binding family protein
SwissprotQ9LTS40.0BH041_ARATH; Putative transcription factor bHLH041
TrEMBLA0A178U9930.0A0A178U993_ARATH; Uncharacterized protein
STRINGAT5G56960.10.0(Arabidopsis thaliana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM70602840
Representative plantOGRP85811114
Publications ? help Back to Top
  1. Riechmann JL, et al.
    Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes.
    Science, 2000. 290(5499): p. 2105-10
    [PMID:11118137]
  2. Abe H, et al.
    Arabidopsis AtMYC2 (bHLH) and AtMYB2 (MYB) function as transcriptional activators in abscisic acid signaling.
    Plant Cell, 2003. 15(1): p. 63-78
    [PMID:12509522]
  3. Heim MA, et al.
    The basic helix-loop-helix transcription factor family in plants: a genome-wide study of protein structure and functional diversity.
    Mol. Biol. Evol., 2003. 20(5): p. 735-47
    [PMID:12679534]
  4. Toledo-Ortiz G,Huq E,Quail PH
    The Arabidopsis basic/helix-loop-helix transcription factor family.
    Plant Cell, 2003. 15(8): p. 1749-70
    [PMID:12897250]
  5. Bailey PC, et al.
    Update on the basic helix-loop-helix transcription factor gene family in Arabidopsis thaliana.
    Plant Cell, 2003. 15(11): p. 2497-502
    [PMID:14600211]
  6. Czechowski T,Bari RP,Stitt M,Scheible WR,Udvardi MK
    Real-time RT-PCR profiling of over 1400 Arabidopsis transcription factors: unprecedented sensitivity reveals novel root- and shoot-specific genes.
    Plant J., 2004. 38(2): p. 366-79
    [PMID:15078338]
  7. Libault M,Wan J,Czechowski T,Udvardi M,Stacey G
    Identification of 118 Arabidopsis transcription factor and 30 ubiquitin-ligase genes responding to chitin, a plant-defense elicitor.
    Mol. Plant Microbe Interact., 2007. 20(8): p. 900-11
    [PMID:17722694]
  8. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]