PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021276766.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

MYB

Protein Properties

Length: 376aa MW: 41981.6 Da PI: 6.4232

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021276766.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	52.1	1.5e-16	14	62	1	48
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd +l+ +++++G+g +W + ++++g++R++k+c++rw++yl XP_021276766.1 14 KGPWSPEEDAKLKAYIEKYGTGgNWIALPQKIGLKRCGKSCRLRWLNYL 62 79*********************************************97 PP
2	Myb_DNA-binding	37.2	6.7e-12	69	111	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g +++eEd ++ + G++ W+ Ia+ ++ gRt++++k++w++ XP_021276766.1 69 GGFSEEEDNIICSLYISIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111 569****************.*****.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 376 aa Download sequence
MGRAPCCDKA NVKKGPWSPE EDAKLKAYIE KYGTGGNWIA LPQKIGLKRC GKSCRLRWLN 60 YLRPNIKHGG FSEEEDNIIC SLYISIGSRW SIIAAQLPGR TDNDIKNYWN TKLKKKLLGR 120 RKQSNINRLS SSNQDPNEAN TADDSQFSQG LSNSALERLQ LHMQLQSLQN PFSFYNNPAL 180 WPKIHPLEEK MIQSIQSSNG SPNLLMQPLL PNPQPENERT ADFYDQPAKA SVAHQQDYPK 240 SSHTKGLELD NSLDGITPSD GSDPFGTGNN LMNSATVPKA DGHHHGTAHS NAAVQPVSNF 300 QAELDEFLNN KTAGYAPQED QMTEFDCFKE MNGAKDSLIW WSNDFDAKSA SSNSWDSTSV 360 LQSSGMFQDY ELGYNM

Sequence ? help Back to Top

Protein Sequence Length: 376 aa Download sequence

MGRAPCCDKA NVKKGPWSPE EDAKLKAYIE KYGTGGNWIA LPQKIGLKRC GKSCRLRWLN  60
YLRPNIKHGG FSEEEDNIIC SLYISIGSRW SIIAAQLPGR TDNDIKNYWN TKLKKKLLGR  120
RKQSNINRLS SSNQDPNEAN TADDSQFSQG LSNSALERLQ LHMQLQSLQN PFSFYNNPAL  180
WPKIHPLEEK MIQSIQSSNG SPNLLMQPLL PNPQPENERT ADFYDQPAKA SVAHQQDYPK  240
SSHTKGLELD NSLDGITPSD GSDPFGTGNN LMNSATVPKA DGHHHGTAHS NAAVQPVSNF  300
QAELDEFLNN KTAGYAPQED QMTEFDCFKE MNGAKDSLIW WSNDFDAKSA SSNSWDSTSV  360
LQSSGMFQDY ELGYNM

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G57620.1	1e-102	MYB family protein