PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021274568.1

Organism

Herrania umbratica

Taxonomic ID

108875

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania

Family

AP2

Protein Properties

Length: 673aa MW: 74731.7 Da PI: 6.8696

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021274568.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	50.9	3.9e-16	323	382	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++gr++A+++d ++ g ++ ++++lg ++ +e+Aa+a++ a++k++g XP_021274568.1 323 SQYRGVTRHRWTGRYEAHLWDnSCKkEGqsRKgRQVYLGGYDMEEKAARAYDLAALKYWG 382 78*****************988886678446***********************98 PP
2	AP2	45.6	1.7e-14	427	476	3	55
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g XP_021274568.1 427 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 476 9*************988532...5**********************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 673 aa Download sequence
MKSLSNDDNN NNNTNWLGFS LSPHMKMEVT NQDPRHQTQS ASVAAAGSGV TTAVPSSLFH 60 SPSHLNYGLY YGVEGENGGL YSHFSAMPLK SDGSLCLMEA LGRSQPQAMV PTSTPKLEDF 120 FGGAAMGSHH YESGDREAMA LSLDSMYYHH NPDHEHSNQN CLDHLQQSSR QQHQQQIQVQ 180 QYQYYSGYRN QEMLLGEEPK ETHVTDCNLQ LPTMADDVAP GMKNWFSRNY STDHAMPQKM 240 IGCMGDNGAE SGSIGAMAYG DLQSLSLSMS PGSQSSCVTG SQQISPSATD YAAMDTKKRG 300 PDNGDQKQIV HRKSIDTFGQ RTSQYRGVTR HRWTGRYEAH LWDNSCKKEG QSRKGRQVYL 360 GGYDMEEKAA RAYDLAALKY WGPSTHINFP LENYQKELEE MKNMTRQEYV AHLRRKSSGF 420 SRGASMYRGV TRHHQHGRWQ ARIGRVAGNK DLYLGTFSTQ EEAAEAYDIA AIKFRGVNAV 480 TNFDITRYDV ERIMASNTLL AGELARRNKE IGPGNEAISH NLLTDNSSGD TNNSPKNNES 540 QPDWKMVLYQ SSQQLEQKQP NMIEYKTQTF SLAPENVVAI DTISSGQREV DDSSKMGTHH 600 LSNASSLVTS LSSSREGSPD RSSSLPMPFA MPPPASKLFT SSATTVNSWI PSAQLRPALS 660 MPHMPVFAAW TDS

Sequence ? help Back to Top

Protein Sequence Length: 673 aa Download sequence

MKSLSNDDNN NNNTNWLGFS LSPHMKMEVT NQDPRHQTQS ASVAAAGSGV TTAVPSSLFH  60
SPSHLNYGLY YGVEGENGGL YSHFSAMPLK SDGSLCLMEA LGRSQPQAMV PTSTPKLEDF  120
FGGAAMGSHH YESGDREAMA LSLDSMYYHH NPDHEHSNQN CLDHLQQSSR QQHQQQIQVQ  180
QYQYYSGYRN QEMLLGEEPK ETHVTDCNLQ LPTMADDVAP GMKNWFSRNY STDHAMPQKM  240
IGCMGDNGAE SGSIGAMAYG DLQSLSLSMS PGSQSSCVTG SQQISPSATD YAAMDTKKRG  300
PDNGDQKQIV HRKSIDTFGQ RTSQYRGVTR HRWTGRYEAH LWDNSCKKEG QSRKGRQVYL  360
GGYDMEEKAA RAYDLAALKY WGPSTHINFP LENYQKELEE MKNMTRQEYV AHLRRKSSGF  420
SRGASMYRGV TRHHQHGRWQ ARIGRVAGNK DLYLGTFSTQ EEAAEAYDIA AIKFRGVNAV  480
TNFDITRYDV ERIMASNTLL AGELARRNKE IGPGNEAISH NLLTDNSSGD TNNSPKNNES  540
QPDWKMVLYQ SSQQLEQKQP NMIEYKTQTF SLAPENVVAI DTISSGQREV DDSSKMGTHH  600
LSNASSLVTS LSSSREGSPD RSSSLPMPFA MPPPASKLFT SSATTVNSWI PSAQLRPALS  660
MPHMPVFAAW TDS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37750.1	1e-132	AP2 family protein