PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_021274110.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Herrania
|
||||||||
Family | MIKC_MADS | ||||||||
Protein Properties | Length: 225aa MW: 26148.8 Da PI: 10.0722 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 91.6 | 4e-29 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+ien++nrqvt+skRrngi+KKA+EL vLCda+v++i+fss+gk++e++s XP_021274110.1 9 KKIENTTNRQVTYSKRRNGIFKKAQELTVLCDAKVSLIMFSSSGKFHEFIS 59 68***********************************************86 PP | |||||||
2 | K-box | 85 | 1.5e-28 | 71 | 169 | 1 | 98 |
K-box 1 yqkssgksleeakaeslqqelakLkkeienLqreq.RhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaL 94 yqk+ g +l+++++e++q+++++Lk+ ++ L+re+ R+++GedL++L++keLq Le ++ +sl+ +R++K++++++q+++ +kk ++l++++ +L XP_021274110.1 71 YQKTLGIDLWSSHYEKMQENYRRLKEINNRLRREIsRQRIGEDLDDLNIKELQALEAKMASSLEAVRQRKYHVIKTQTDTYKKKVRNLEQRHANL 165 78899999************************6543*********************************************************99 PP K-box 95 rkkl 98 l XP_021274110.1 166 VLDL 169 7665 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 225 aa Download sequence |
MGRGKIEIKK IENTTNRQVT YSKRRNGIFK KAQELTVLCD AKVSLIMFSS SGKFHEFISP 60 NISTKTFFDL YQKTLGIDLW SSHYEKMQEN YRRLKEINNR LRREISRQRI GEDLDDLNIK 120 ELQALEAKMA SSLEAVRQRK YHVIKTQTDT YKKKVRNLEQ RHANLVLDLE AKLEDGIVEN 180 EAYYESAMGL ANGASNLYAL RPHQNHQANL LYHGGRFGPN DLRLA |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G54340.1 | 6e-75 | MIKC_MADS family protein |