PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Dr16427.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea
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Family | NF-YC | ||||||||
Protein Properties | Length: 174aa MW: 19584.3 Da PI: 10.5599 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 23 | 1.7e-07 | 76 | 162 | 16 | 99 |
NF-YC 16 fknhelPlarikkilkade....dv.kmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprd 99 ++ ++P++r+ ++++++ + ++ + +a l+ ka e+f+ ++t + +a++ ++++ +++++v + ++++fl d +p++ Dr16427.1 76 VATCSFPMSRVWRLVRSEGcqgsAIdTRTTQDAVFLINKAAEMFLEKFTEDVYANAKH--KKSVAYKNLSSTVYKEKKYEFLSDFIPEK 162 667789*******999874211123234578999***************988877765..56677789******************986 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 174 aa Download sequence |
MKSSIKKTIT KKKHMSESDD VSSARGKEKR ATMNTEEKKK SQKRPKANNK EKEKKRKGAS 60 FSSSSSSTSS TSWGAVATCS FPMSRVWRLV RSEGCQGSAI DTRTTQDAVF LINKAAEMFL 120 EKFTEDVYAN AKHKKSVAYK NLSSTVYKEK KYEFLSDFIP EKLRGEDALK AKAE |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 38 | 57 | KKKSQKRPKANNKEKEKKRK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07980.1 | 3e-24 | NF-YC family protein |
Link Out ? help Back to Top | |
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Ensembl | Dr16427.1 |