PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr16176.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

MIKC_MADS

Protein Properties

Length: 405aa MW: 46081.3 Da PI: 6.9191

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr16176.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	98	3.9e-31	9	59	1	51
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtfskRr g+lKKA+E+SvLCdaeva+i+fs++gklyeyss Dr16176.1 9 KRIENKINRQVTFSKRRSGLLKKAHEISVLCDAEVALIVFSTKGKLYEYSS 59 79***********************************************96 PP
2	K-box	90.2	3.7e-30	88	174	14	100
K-box 14 aeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100 + + e+ kLk++ie +q++qRhl+G++L++L +k+Lq+LeqqLe+slk+iRs+K++ll ++i +lqkkek l e+nk L+++++e Dr16176.1 88 QGDWFLEYGKLKAKIEIIQKSQRHLMGDQLDTLGIKQLQHLEQQLENSLKHIRSRKSHLLSDSIADLQKKEKLLMEQNKLLENEVME 174 557888****************************************************************************99986 PP

Sequence ? help Back to Top
Protein Sequence Length: 405 aa Download sequence
MGRGRVQLKR IENKINRQVT FSKRRSGLLK KAHEISVLCD AEVALIVFST KGKLYEYSSD 60 SSMERIIERY EHYSYAEKAL SMTEPDSQGD WFLEYGKLKA KIEIIQKSQR HLMGDQLDTL 120 GIKQLQHLEQ QLENSLKHIR SRKSHLLSDS IADLQKKEKL LMEQNKLLEN EVMEKEKARA 180 MAEQTQWEQQ NQAQQTTSCS SAPSFLITTD SLPTLNIGYL QTSSSSNAHT NVRWHPYFLN 240 PSAPKEGIKK TDLYKLKYGV EKSEATSSRM KKVFQGIGLE YDPSGLTGNT VDSHRLIALA 300 AQQGYDKQNA LVEELFFNYF CEGKYVGDHQ VLLDAAEKVG IERAADVLED PSKLLEEINE 360 ELEKYPARGM GVPLFLINGE HKISGGQPPE VFLKTFQEIA ENRTT

Sequence ? help Back to Top

Protein Sequence Length: 405 aa Download sequence

MGRGRVQLKR IENKINRQVT FSKRRSGLLK KAHEISVLCD AEVALIVFST KGKLYEYSSD  60
SSMERIIERY EHYSYAEKAL SMTEPDSQGD WFLEYGKLKA KIEIIQKSQR HLMGDQLDTL  120
GIKQLQHLEQ QLENSLKHIR SRKSHLLSDS IADLQKKEKL LMEQNKLLEN EVMEKEKARA  180
MAEQTQWEQQ NQAQQTTSCS SAPSFLITTD SLPTLNIGYL QTSSSSNAHT NVRWHPYFLN  240
PSAPKEGIKK TDLYKLKYGV EKSEATSSRM KKVFQGIGLE YDPSGLTGNT VDSHRLIALA  300
AQQGYDKQNA LVEELFFNYF CEGKYVGDHQ VLLDAAEKVG IERAADVLED PSKLLEEINE  360
ELEKYPARGM GVPLFLINGE HKISGGQPPE VFLKTFQEIA ENRTT

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69120.1	4e-80	MIKC_MADS family protein

Link Out ? help Back to Top
Ensembl	Dr16176.1