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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Dr13348.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 254aa MW: 29683.1 Da PI: 10.0569 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 92.9 | 1.6e-29 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien++nrqvtfskRrngi+KKA E+SvLCda+v+v+ifss+gk+ ey+s Dr13348.1 9 KRIENSTNRQVTFSKRRNGIIKKAREISVLCDAQVSVVIFSSSGKMSEYCS 59 79***********************************************96 PP | |||||||
2 | K-box | 44.4 | 7e-16 | 142 | 203 | 30 | 95 |
K-box 30 nLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLr 95 L++ Rhl+GedL+sL+ keL +e++L+++l+++R+k++++l++ l+k e l+eenk+L+ Dr13348.1 142 FLKSCGRHLKGEDLNSLNPKELIPIEEALQNGLTNVRDKQMDYLKM----LKKNESLLEEENKRLS 203 588899**********************************999876....5555555555555554 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 254 aa Download sequence |
MGRGKIEIKR IENSTNRQVT FSKRRNGIIK KAREISVLCD AQVSVVIFSS SGKMSEYCSP 60 STSLSKMLEK YQQNSGRRLW DAKHEVXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX 120 XXXXXXXXXX XXXXXXXXKK TFLKSCGRHL KGEDLNSLNP KELIPIEEAL QNGLTNVRDK 180 QMDYLKMLKK NESLLEEENK RLSYILQHHQ QMAMNGNVRD MELGYHQKDR DYPSQMPMAF 240 RVQPIQPNLQ EDKQ |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G20240.1 | 2e-41 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
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Ensembl | Dr13348.1 |