PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dr08767.1
Organism
Dioscorea rotundata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea
Family MIKC_MADS
Protein Properties Length: 299aa    MW: 33535.6 Da    PI: 8.6731
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dr08767.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF87.76.3e-2875125151
                S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
     SRF-TF   1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 
                k+ien +nrqvt+skRr+gi+KKA+EL vLCdaev++++fsstgk+ ey+s
  Dr08767.1  75 KKIENPTNRQVTYSKRRQGIMKKAKELTVLCDAEVSIVMFSSTGKFAEYCS 125
                68***********************************************96 PP
2K-box873.7e-29137235199
      K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                yq+ +g +l+++++e++q +l+ Lk+ ++nL+re+R+++Ge+L+ L++ eL+ Leq+++++lk +R++K++++++q+++ +kk k+ +e+++ L ++le
  Dr08767.1 137 YQQVTGIDLWHSQYERMQSNLNHLKEINHNLRREIRQRMGEELDGLNIDELRGLEQNVDEALKLVRQRKYHVITTQTDTYKKKLKNSHEAHQHLLRELE 235
                78899999**************************************************************************************99986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    
MTVGSFSKCL EIGIFSSSLI SRDDDVAGAS GRWTVADLKP HRSSSSSASS SSSGSSSSSS  60
CRVLGRMGRG KIEIKKIENP TNRQVTYSKR RQGIMKKAKE LTVLCDAEVS IVMFSSTGKF  120
AEYCSPSSDT KSMFDQYQQV TGIDLWHSQY ERMQSNLNHL KEINHNLRRE IRQRMGEELD  180
GLNIDELRGL EQNVDEALKL VRQRKYHVIT TQTDTYKKKL KNSHEAHQHL LRELEMREGQ  240
QAYGFMDNDP NNYECAIDLA AAAAAAAATG SHVYAYRVQP NQPNLHGIMS YNSNDLRLA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54340.11e-66MIKC_MADS family protein