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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Dr08767.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 299aa MW: 33535.6 Da PI: 8.6731 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 87.7 | 6.3e-28 | 75 | 125 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 k+ien +nrqvt+skRr+gi+KKA+EL vLCdaev++++fsstgk+ ey+s Dr08767.1 75 KKIENPTNRQVTYSKRRQGIMKKAKELTVLCDAEVSIVMFSSTGKFAEYCS 125 68***********************************************96 PP | |||||||
2 | K-box | 87 | 3.7e-29 | 137 | 235 | 1 | 99 |
K-box 1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 yq+ +g +l+++++e++q +l+ Lk+ ++nL+re+R+++Ge+L+ L++ eL+ Leq+++++lk +R++K++++++q+++ +kk k+ +e+++ L ++le Dr08767.1 137 YQQVTGIDLWHSQYERMQSNLNHLKEINHNLRREIRQRMGEELDGLNIDELRGLEQNVDEALKLVRQRKYHVITTQTDTYKKKLKNSHEAHQHLLRELE 235 78899999**************************************************************************************99986 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 299 aa Download sequence |
MTVGSFSKCL EIGIFSSSLI SRDDDVAGAS GRWTVADLKP HRSSSSSASS SSSGSSSSSS 60 CRVLGRMGRG KIEIKKIENP TNRQVTYSKR RQGIMKKAKE LTVLCDAEVS IVMFSSTGKF 120 AEYCSPSSDT KSMFDQYQQV TGIDLWHSQY ERMQSNLNHL KEINHNLRRE IRQRMGEELD 180 GLNIDELRGL EQNVDEALKL VRQRKYHVIT TQTDTYKKKL KNSHEAHQHL LRELEMREGQ 240 QAYGFMDNDP NNYECAIDLA AAAAAAAATG SHVYAYRVQP NQPNLHGIMS YNSNDLRLA |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G54340.1 | 1e-66 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
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Ensembl | Dr08767.1 |