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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Dr07508.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 965aa MW: 106400 Da PI: 6.7995 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 70.1 | 2e-22 | 727 | 768 | 9 | 50 |
HHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 9 rqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 qvtfskRrng++KKA+ELSvLCd+++a+i+fs++g+l +s Dr07508.1 727 MQVTFSKRRNGLIKKAYELSVLCDIDIALIMFSPSGRLSHFS 768 59************************************9997 PP | |||||||
2 | K-box | 20.8 | 1.6e-08 | 773 | 845 | 7 | 79 |
K-box 7 ksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqiee 79 + +++ + e+l+qe+++ + +++ ++ +R + + ++ s+ eL++ e+ L ++l++i ++K+ ll ++++ Dr07508.1 773 SGNANPNLEELHQEITRFQHQLQISEERLRYFEPDPMSATSMSELESCEKFLTEALTRITDRKKYLLGDHLSS 845 34678899**********************************************************9998865 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 965 aa Download sequence |
MMVLRSSSRP SVLSVMSVLG FSSFLLLLLF VWGSESLTLS SRLVHRFSDE VAVAAVKGTE 60 APPPRRSLEF YEVLVKSDLA RRNRRFGGSN FSMLFPSEGS ETMSLGNDFG WLHYTWIDLG 120 TPKVSFLVAL DAGSDLLWVP CDCIQCAPLS GYQGSLVKDL GIYSPAESRT SKNLSCNHKL 180 CASGPNCENP NEPCPYTIDY YSENTASSGV LVKDKLYLAT ATDKTAVQAE VIIGWAIISL 240 EFISSTYACC LLLAQFFSFS LIWYSRISST LKFSCGRNQS GGYLDGIAPD GLLGLGLGEI 300 SLPSILAKAG LVCNSFSMCF REDDSGRILF GDQGVAKQKS TPFVPLSGKY VTYIVEVESF 360 CIGAHCLGKS GFQALVDSGS SFTFLPSDVY KSVSQEFDKQ VKAPRLEQDA PPWEYCYKAS 420 LLEMPKVPSV ILSFAANKSF EVTYPLFPLY SKEGGLVAVC LAVQSSGETL GTIGQNFMKG 480 YKMVFDRENL KLGWSHSDCN DLNNSRTVPL TPPAGSHNRP ENPLPSDQQL ASPNGTAVSP 540 AVAVRAPTNN SAATSNSLSP CLLLLLLVIT GILLVDMLEL NSMLRSLVLL SGHKTKMRKH 600 LNTVELKVRM DCDGCELKIK KVLFSMKGVK SVEVDRKQQK VTVIGFVEPS RVLKKVISIG 660 KKAEMWPYVP YNLVAHPYTV QSYDKKAPPG FVRNVEVVNA SSLQVTKPEE QLTNLFSDDN 720 PNACSVMQVT FSKRRNGLIK KAYELSVLCD IDIALIMFSP SGRLSHFSGH RSSGNANPNL 780 EELHQEITRF QHQLQISEER LRYFEPDPMS ATSMSELESC EKFLTEALTR ITDRKKYLLG 840 DHLSSYDTSN TGMQMYLQPH QEDHMQATFG NEMVHWVPEN ATNPNQHIFV GSESLIPLRD 900 HGMYAHQISQ GTSLQMDPQM GGCHISNQSD NNLPAWHQAY TSTELLSNLI AANNPFPLLQ 960 VILSL |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G22130.1 | 3e-44 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
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Ensembl | Dr07508.1 |