PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr07508.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

MIKC_MADS

Protein Properties

Length: 965aa MW: 106400 Da PI: 6.7995

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr07508.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	70.1	2e-22	727	768	9	50
HHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 9 rqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 qvtfskRrng++KKA+ELSvLCd+++a+i+fs++g+l +s Dr07508.1 727 MQVTFSKRRNGLIKKAYELSVLCDIDIALIMFSPSGRLSHFS 768 59************************************9997 PP
2	K-box	20.8	1.6e-08	773	845	7	79
K-box 7 ksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqiee 79 + +++ + e+l+qe+++ + +++ ++ +R + + ++ s+ eL++ e+ L ++l++i ++K+ ll ++++ Dr07508.1 773 SGNANPNLEELHQEITRFQHQLQISEERLRYFEPDPMSATSMSELESCEKFLTEALTRITDRKKYLLGDHLSS 845 34678899**********************************************************9998865 PP

Sequence ? help Back to Top
Protein Sequence Length: 965 aa Download sequence
MMVLRSSSRP SVLSVMSVLG FSSFLLLLLF VWGSESLTLS SRLVHRFSDE VAVAAVKGTE 60 APPPRRSLEF YEVLVKSDLA RRNRRFGGSN FSMLFPSEGS ETMSLGNDFG WLHYTWIDLG 120 TPKVSFLVAL DAGSDLLWVP CDCIQCAPLS GYQGSLVKDL GIYSPAESRT SKNLSCNHKL 180 CASGPNCENP NEPCPYTIDY YSENTASSGV LVKDKLYLAT ATDKTAVQAE VIIGWAIISL 240 EFISSTYACC LLLAQFFSFS LIWYSRISST LKFSCGRNQS GGYLDGIAPD GLLGLGLGEI 300 SLPSILAKAG LVCNSFSMCF REDDSGRILF GDQGVAKQKS TPFVPLSGKY VTYIVEVESF 360 CIGAHCLGKS GFQALVDSGS SFTFLPSDVY KSVSQEFDKQ VKAPRLEQDA PPWEYCYKAS 420 LLEMPKVPSV ILSFAANKSF EVTYPLFPLY SKEGGLVAVC LAVQSSGETL GTIGQNFMKG 480 YKMVFDRENL KLGWSHSDCN DLNNSRTVPL TPPAGSHNRP ENPLPSDQQL ASPNGTAVSP 540 AVAVRAPTNN SAATSNSLSP CLLLLLLVIT GILLVDMLEL NSMLRSLVLL SGHKTKMRKH 600 LNTVELKVRM DCDGCELKIK KVLFSMKGVK SVEVDRKQQK VTVIGFVEPS RVLKKVISIG 660 KKAEMWPYVP YNLVAHPYTV QSYDKKAPPG FVRNVEVVNA SSLQVTKPEE QLTNLFSDDN 720 PNACSVMQVT FSKRRNGLIK KAYELSVLCD IDIALIMFSP SGRLSHFSGH RSSGNANPNL 780 EELHQEITRF QHQLQISEER LRYFEPDPMS ATSMSELESC EKFLTEALTR ITDRKKYLLG 840 DHLSSYDTSN TGMQMYLQPH QEDHMQATFG NEMVHWVPEN ATNPNQHIFV GSESLIPLRD 900 HGMYAHQISQ GTSLQMDPQM GGCHISNQSD NNLPAWHQAY TSTELLSNLI AANNPFPLLQ 960 VILSL

Sequence ? help Back to Top

Protein Sequence Length: 965 aa Download sequence

MMVLRSSSRP SVLSVMSVLG FSSFLLLLLF VWGSESLTLS SRLVHRFSDE VAVAAVKGTE  60
APPPRRSLEF YEVLVKSDLA RRNRRFGGSN FSMLFPSEGS ETMSLGNDFG WLHYTWIDLG  120
TPKVSFLVAL DAGSDLLWVP CDCIQCAPLS GYQGSLVKDL GIYSPAESRT SKNLSCNHKL  180
CASGPNCENP NEPCPYTIDY YSENTASSGV LVKDKLYLAT ATDKTAVQAE VIIGWAIISL  240
EFISSTYACC LLLAQFFSFS LIWYSRISST LKFSCGRNQS GGYLDGIAPD GLLGLGLGEI  300
SLPSILAKAG LVCNSFSMCF REDDSGRILF GDQGVAKQKS TPFVPLSGKY VTYIVEVESF  360
CIGAHCLGKS GFQALVDSGS SFTFLPSDVY KSVSQEFDKQ VKAPRLEQDA PPWEYCYKAS  420
LLEMPKVPSV ILSFAANKSF EVTYPLFPLY SKEGGLVAVC LAVQSSGETL GTIGQNFMKG  480
YKMVFDRENL KLGWSHSDCN DLNNSRTVPL TPPAGSHNRP ENPLPSDQQL ASPNGTAVSP  540
AVAVRAPTNN SAATSNSLSP CLLLLLLVIT GILLVDMLEL NSMLRSLVLL SGHKTKMRKH  600
LNTVELKVRM DCDGCELKIK KVLFSMKGVK SVEVDRKQQK VTVIGFVEPS RVLKKVISIG  660
KKAEMWPYVP YNLVAHPYTV QSYDKKAPPG FVRNVEVVNA SSLQVTKPEE QLTNLFSDDN  720
PNACSVMQVT FSKRRNGLIK KAYELSVLCD IDIALIMFSP SGRLSHFSGH RSSGNANPNL  780
EELHQEITRF QHQLQISEER LRYFEPDPMS ATSMSELESC EKFLTEALTR ITDRKKYLLG  840
DHLSSYDTSN TGMQMYLQPH QEDHMQATFG NEMVHWVPEN ATNPNQHIFV GSESLIPLRD  900
HGMYAHQISQ GTSLQMDPQM GGCHISNQSD NNLPAWHQAY TSTELLSNLI AANNPFPLLQ  960
VILSL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G22130.1	3e-44	MIKC_MADS family protein

Link Out ? help Back to Top
Ensembl	Dr07508.1