PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dr06465.1
Organism
Dioscorea rotundata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea
Family ARF
Protein Properties Length: 1003aa    MW: 111854 Da    PI: 5.1857
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dr06465.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B375.36.9e-24140241199
                EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                f+k lt sd++++g +++p++ ae+       ++++++ ++l+++d++ + W++++iyr++++r++lt+GW++Fv a++Lk+gD+v+F +d  ++ +l++
  Dr06465.1 140 FCKNLTASDTSTHGGFSVPRRAAEKLfpqldySMQPPN-QELVVRDLHDNLWTFRHIYRGQPKRHLLTTGWSSFVGAKRLKAGDSVLFIRD--DKSQLLL 236
                89*********************999*****9555555.49************************************************54..5666799 PP

                EEE-S CS
         B3  95 kvfrk 99 
                +v+r+
  Dr06465.1 237 GVRRA 241
                99987 PP
2Auxin_resp116.32.6e-38266348183
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                 a haa ++s F+v+YnPra++s+F+++++k++ka +++vsvGmRf m+fete+ss+rr++Gt+vg++d+dp+rWpnS+Wr+L+
   Dr06465.1 266 ADHAAXSRSXFTVYYNPRACPSDFIIPLAKYHKAAYTQVSVGMRFGMMFETEESSKRRYMGTIVGINDYDPLRWPNSQWRNLQ 348
                 56999****************************************************************************97 PP
Sequence ? help Back to Top
Protein Sequence    Length: 1003 aa     Download sequence    
MSSVQEPVKP SGTLLEEMKL LGEAQNKQGV KKAINSELWH ACAGPLVSLP KPGSLVYYFP  60
QGHSEQVTAS TRKTANSHIP NYPSLSSQLM CQVHNVTLHA DRDTDEIYAQ LTLQPVNSEM  120
DVYPIPDFGH SISKQPTEYF CKNLTASDTS THGGFSVPRR AAEKLFPQLD YSMQPPNQEL  180
VVRDLHDNLW TFRHIYRGQP KRHLLTTGWS SFVGAKRLKA GDSVLFIRDD KSQLLLGVRR  240
ANRQQITIPS SVLSADSMHM GVLAAADHAA XSRSXFTVYY NPRACPSDFI IPLAKYHKAA  300
YTQVSVGMRF GMMFETEESS KRRYMGTIVG INDYDPLRWP NSQWRNLQVE WDEHGYGERP  360
ERVSVWEIET PESLFVFPPA TSSLKRQCLP VPGVQIGFAN SSPLLQAPEN GNAVLNPLLS  420
DHDSQLLLLQ GQKSCLNTHL GSQQSIYASI FQNIRGHNGT KIVPYCPMPS ISTMRSQVPH  480
EAKTAILQND HLSLMQQHIP LQSVLLQNEK PLPFVDQQHV DVDCVSWTMK EPQESLPEKS  540
FPDRHLPAKT EGAERSTCLP GNSCETTSVE SEIPSAKPPN EVNEHSSNLQ RTSPQQLQAE  600
HHSESKENII ADTIANDELK FEGQSDPLPN EPPLSRKDSL DSVSMDNPTI LPLHEGYFPS  660
HNLDHDDWIF RRSPDHSIID PLKEPEQGFL FSSASDSTSL SGDISTLVNP ENFSSFDMYQ  720
FSGSSDSHSP QCLPSFMQEF FSPQDLNPPN VEHGAPAPGI LSYEMHDLEA IREEGTKLSG  780
IRDFPNGSYV QSEACNNTNF MPDAHVLNTS IESSGKLKSS CLQVPSGSLI RNWSSNQDMQ  840
SQVTSASLAD SQFYSFQDIP DSSGGTSSGS MDVNEYSCLS RGTRKQVSPL PLRTYTKVQK  900
LGSVGRSIDV TRFQNYQELK SAIACMFGLE GQLDDPISSE WKLVYVDYEN DILLVGDDPW  960
EEFVNCVRCI KILSPSEVQQ MSQDGMQLSN TSNINPEILY SER
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19850.10.0ARF family protein