PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Dr00522.1

Organism

Dioscorea rotundata

Taxonomic ID

55577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; Dioscoreales; Dioscoreaceae; Dioscorea

Family

MIKC_MADS

Protein Properties

Length: 216aa MW: 24944.4 Da PI: 8.4644

Description

MIKC_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Dr00522.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	92.9	1.5e-29	10	59	2	51
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 rien + rqvtfskRr g+lKKA+ELSvLCdaeva+i+fs++gklye++s Dr00522.1 10 RIENATSRQVTFSKRRSGLLKKAFELSVLCDAEVALIVFSPRGKLYEFAS 59 8***********************************************86 PP
2	K-box	77.4	3.6e-26	79	171	7	99
K-box 7 ksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 + e++ ++++ e a + k++e + ++R+llGe+Les+s++eL++Le qLe+sl +iR ++n l+++qie+l++ke++l e n+ Lr+k+e Dr00522.1 79 RGIMEQNLQQWRDETAAIAKNLEVVEASKRKLLGENLESCSIQELHELEFQLERSLCNIRGRRNSLITDQIEKLKEKERMLLEVNELLRQKFE 171 447899*************************************************************************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 216 aa Download sequence
MVRGKTEMRR IENATSRQVT FSKRRSGLLK KAFELSVLCD AEVALIVFSP RGKLYEFASS 60 NMQKTIDRYR VHGKDESARG IMEQNLQQWR DETAAIAKNL EVVEASKRKL LGENLESCSI 120 QELHELEFQL ERSLCNIRGR RNSLITDQIE KLKEKERMLL EVNELLRQKF EAQPQLLLSS 180 ASRDTPSEEQ SPNYIDVETE LYIGRPGDAK TVNLQR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45660.1	9e-68	MIKC_MADS family protein

Link Out ? help Back to Top
Ensembl	Dr00522.1