PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028114852.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

C2H2

Protein Properties

Length: 355aa MW: 39681.3 Da PI: 6.8196

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028114852.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.5	2.4e-05	193	212	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++Cp C k+F+r n++ H+ XP_028114852.1 193 FSCPVCYKTFNRYNNMQMHM 212 89*****************9 PP
2	zf-C2H2	14.5	0.0001	277	299	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C +Cgk F + + ++H +++ XP_028114852.1 277 FMCRKCGKAFAVRGDWRTHEKNC 299 89*****************9987 PP

Sequence ? help Back to Top
Protein Sequence Length: 355 aa Download sequence
MADPYSNFYS QWFKFNPLYL SSPNPPPPQL PQPPSSTQNF YSSNGFFNLN NPIPYQTPPP 60 SPPLKEALPL LSLSPSRHDA QEPSCTSMDV DKKKLRLESQ SLFSSSSTRA GDDDDGDEDD 120 DGETVTVALH IGLPNPSASD LASMLSSSST EITDDHKDGD GGGDVSGYPM NRLNKGQYWI 180 PTPSQILIGP TQFSCPVCYK TFNRYNNMQM HMWGHGSQYR KGPESLRGTQ PTGMLRLPCY 240 CCAPGCRNNI DHPRSKPLKD FRTLQTHYKR KHGIKPFMCR KCGKAFAVRG DWRTHEKNCG 300 KLWYCICGSD FKHKRSLKDH IKAFGHGHGA FGIDGGFEEE DEPASEVEQD DDSMQ

Sequence ? help Back to Top

Protein Sequence Length: 355 aa Download sequence

MADPYSNFYS QWFKFNPLYL SSPNPPPPQL PQPPSSTQNF YSSNGFFNLN NPIPYQTPPP  60
SPPLKEALPL LSLSPSRHDA QEPSCTSMDV DKKKLRLESQ SLFSSSSTRA GDDDDGDEDD  120
DGETVTVALH IGLPNPSASD LASMLSSSST EITDDHKDGD GGGDVSGYPM NRLNKGQYWI  180
PTPSQILIGP TQFSCPVCYK TFNRYNNMQM HMWGHGSQYR KGPESLRGTQ PTGMLRLPCY  240
CCAPGCRNNI DHPRSKPLKD FRTLQTHYKR KHGIKPFMCR KCGKAFAVRG DWRTHEKNCG  300
KLWYCICGSD FKHKRSLKDH IKAFGHGHGA FGIDGGFEEE DEPASEVEQD DDSMQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G57670.1	1e-111	C2H2 family protein