PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_028114332.1
Organism
Camellia sinensis var. sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis
Family HD-ZIP
Protein Properties Length: 845aa    MW: 93097.4 Da    PI: 6.3119
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_028114332.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.31.2e-181775357
                    --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
        Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                    k  ++t+eq+e+Le+++ ++++ps  +r+++ +++    +++ +q+kvWFqNrR +ek+
  XP_028114332.1 17 KYVRYTPEQVEALERVYSECPKPSSMKRQQIIRECpilsNIEPKQIKVWFQNRRCREKQ 75
                    6789*****************************************************97 PP
2START170.21.3e-531663732204
                     HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEE CS
           START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlm 94 
                     +aee+++e+++ka+ ++  Wv++  +++g++++ +++ s+++sg a+r++g+v  +++  v+e+l+d++ W ++++  ++l vi +g  g+++l+
  XP_028114332.1 166 IAEETLAEFLSKATGTAVDWVQMIGMKPGPDSIGIVAVSRNCSGVAARVCGLVSLEPT-KVAEILKDRPSWYRDCRCLDVLSVIPTGngGIIELI 259
                     68999*****************************************************.8888888888************************** PP

                     EEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHH CS
           START  95 vaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslv 185
                     +++++a+++l+  Rdf+++Ry+ +l++g++vi+++S++  +  p+    s +vRae+lpSg+li+p+++g+s +++v+h+dl++++++++lr+l+
  XP_028114332.1 260 YMQTYAPTTLAVaRDFWTLRYTTSLEDGSLVICERSLTTSTGGPTgppASCFVRAEMLPSGYLIRPCEGGGSIIHIVDHIDLDAWSVPEVLRPLY 354
                     ********99988**************************999998888999******************************************** PP

                     HHHHHHHHHHHHHHTXXXX CS
           START 186 ksglaegaktwvatlqrqc 204
                     +s+ + ++k++va+l++ +
  XP_028114332.1 355 ESSKILAQKMTVAALRHIR 373
                     ***************9865 PP
Sequence ? help Back to Top
Protein Sequence    Length: 845 aa     Download sequence    
MALSMHRESN KQMDSSKYVR YTPEQVEALE RVYSECPKPS SMKRQQIIRE CPILSNIEPK  60
QIKVWFQNRR CREKQRKESS RLQTVNRKLT AMNKLLMEEN DRLQKQVSQL VYDNGYMRQQ  120
LHTVSATATT DTSCESVVIT DQQQQQNPNP QRPQRDANNP ASLLAIAEET LAEFLSKATG  180
TAVDWVQMIG MKPGPDSIGI VAVSRNCSGV AARVCGLVSL EPTKVAEILK DRPSWYRDCR  240
CLDVLSVIPT GNGGIIELIY MQTYAPTTLA VARDFWTLRY TTSLEDGSLV ICERSLTTST  300
GGPTGPPASC FVRAEMLPSG YLIRPCEGGG SIIHIVDHID LDAWSVPEVL RPLYESSKIL  360
AQKMTVAALR HIRQIAQETS GEIQYSGGRQ PAVLRTFSQR LCRGFNDAIN GFADDGWTIM  420
GSDGVEDVTI AINSSPSKFL GSQYNTLSML PSFGGVLCAK ASMLLQNVPP ALLVRFLREH  480
RSEWADYGVD AYSAACLKSS PYAVPCARPG GLPCSQVILP LAHTVEHEEF LEVVRLEGHV  540
FSPEDIALSR DMYLLQLCSG VDENAAGACA QLVFAPIDES FADDAPLLPS GFRVIPLDPK  600
PDGPTATRTL DLASTLEVGN GGVRPSGEAD LSSYNHRSVL TIAFQFTFEN HFRDNVAAMA  660
RQYVRSVVGS VQRVAMAIAP SRLSSHLGPK SLPGSPEALT LARWICRSYR VHTGSELLRV  720
DAQTGDAVLK QLWHHSDAIM CCSVKLNASA VFTFANQAGL DMLETTLVAL QDIMLDKILD  780
ESGRKILLSE FSKIMQQGFA YLPAGICISS MGRPVSYEQA IAWQVLNDDD SSHCLAFMFM  840
NWSFV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34710.10.0HD-ZIP family protein