PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028104692.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

AP2

Protein Properties

Length: 395aa MW: 45179.3 Da PI: 7.6721

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028104692.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	46.6	8.5e-15	64	123	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 s+++GV+ ++++gr++A+++d s+n k+ k+++lg ++ +e Aa+a++ a++k++g XP_028104692.1 64 SKFRGVSKHRWTGRFEAHLWDkLSWNVtqkKKgKQVYLGAYDEEESAARAYDSAALKYWG 123 79*****************888855555447***********************98 PP
2	AP2	52.4	1.4e-16	166	217	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV +++ +grW+A+I + g +k+ +lg++ t eeAa+a++ a+ +++g XP_028104692.1 166 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYSTQEEAARAYDIAAIEYRG 217 89**99******99966...3.6***********************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 395 aa Download sequence
MKMVKNEENP GRRSRSRVDG EALEAKCAKR KRRDLIPACH NQQIEQPRQQ VYQASAPTTV 60 KRSSKFRGVS KHRWTGRFEA HLWDKLSWNV TQKKKGKQVY LGAYDEEESA ARAYDSAALK 120 YWGTSTFTNF PVSDYDKEIE IMQTVTKEEY LASLRRKSSG FSRGVSKYRG VARHHHNGRW 180 EARIGRVFGN KYLYLGTYST QEEAARAYDI AAIEYRGINA VTNFDLSSYI RWLQPGANNP 240 IAVQEQQMNT ESQSVPSSNF SSGEEFQSLL FHVDNFSVDD LNFPQKQEVI ERKFPVSKYA 300 ESSSPTALGL LLRSSVFKEL VEKNSNVFED EIDGEDTKHQ LQMGRDDEYA RILYDGNGDI 360 PFVLSSNREF QGELHFTYND QGELLGAASC DMPSM

Sequence ? help Back to Top

Protein Sequence Length: 395 aa Download sequence

MKMVKNEENP GRRSRSRVDG EALEAKCAKR KRRDLIPACH NQQIEQPRQQ VYQASAPTTV  60
KRSSKFRGVS KHRWTGRFEA HLWDKLSWNV TQKKKGKQVY LGAYDEEESA ARAYDSAALK  120
YWGTSTFTNF PVSDYDKEIE IMQTVTKEEY LASLRRKSSG FSRGVSKYRG VARHHHNGRW  180
EARIGRVFGN KYLYLGTYST QEEAARAYDI AAIEYRGINA VTNFDLSSYI RWLQPGANNP  240
IAVQEQQMNT ESQSVPSSNF SSGEEFQSLL FHVDNFSVDD LNFPQKQEVI ERKFPVSKYA  300
ESSSPTALGL LLRSSVFKEL VEKNSNVFED EIDGEDTKHQ LQMGRDDEYA RILYDGNGDI  360
PFVLSSNREF QGELHFTYND QGELLGAASC DMPSM

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54320.3	3e-94	AP2 family protein