PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028099209.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

AP2

Protein Properties

Length: 420aa MW: 47078.4 Da PI: 9.5102

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028099209.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	49.4	1.1e-15	78	137	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng...kr.krfslgkfgtaeeAakaaiaarkkleg 55 s+++GV++++++gr++A+++d s+n k+ k+++lg f+ +e Aa+a++ a+ k++g XP_028099209.1 78 SRFRGVSRHRWTGRFEAHLWDkGSWNAtqrKKgKQVYLGAFDEEESAARAYDLAAIKYWG 137 789****************999988876447***********************98 PP
2	AP2	50.6	4.8e-16	180	231	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV +++ +grW+A+I + g +k+ +lg++ t eeAa a++ a+ +++g XP_028099209.1 180 SKYRGVARHHHNGRWEARIGRvF---G-NKYLYLGTYSTQEEAAHAYDIAAIEYRG 231 89**99******99966...3.6***********************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 420 aa Download sequence
MEMITAVKSE VNPVRRRGVR NAEGGDNSPM AKGGKRRRRE PAPVADGCAD QGEQPQTETL 60 QVDPSSTTTT TTTVKRSSRF RGVSRHRWTG RFEAHLWDKG SWNATQRKKG KQVYLGAFDE 120 EESAARAYDL AAIKYWGPTT FTNFPVPEYE KEIEIMQNLT KEEYLASLRR RSSGFSRGVS 180 KYRGVARHHH NGRWEARIGR VFGNKYLYLG TYSTQEEAAH AYDIAAIEYR GINAVTNFDL 240 STYIRWLRPG GNSVALQEPV QKLEPPLANS STNFMSSQEP PEFTFRSSPY KLGDTGNNMP 300 RKQELLETKM PISPCNTSAS PTALGLLLRS SMFRELVEKN SNVIADDDTD NQNKAKKEPG 360 IGGSDDLRGM FYSNIGSNPY GCSTRSETLQ TQEAENTLPL YNNNKTGQSL WNVAFNLPSN

Sequence ? help Back to Top

Protein Sequence Length: 420 aa Download sequence

MEMITAVKSE VNPVRRRGVR NAEGGDNSPM AKGGKRRRRE PAPVADGCAD QGEQPQTETL  60
QVDPSSTTTT TTTVKRSSRF RGVSRHRWTG RFEAHLWDKG SWNATQRKKG KQVYLGAFDE  120
EESAARAYDL AAIKYWGPTT FTNFPVPEYE KEIEIMQNLT KEEYLASLRR RSSGFSRGVS  180
KYRGVARHHH NGRWEARIGR VFGNKYLYLG TYSTQEEAAH AYDIAAIEYR GINAVTNFDL  240
STYIRWLRPG GNSVALQEPV QKLEPPLANS STNFMSSQEP PEFTFRSSPY KLGDTGNNMP  300
RKQELLETKM PISPCNTSAS PTALGLLLRS SMFRELVEKN SNVIADDDTD NQNKAKKEPG  360
IGGSDDLRGM FYSNIGSNPY GCSTRSETLQ TQEAENTLPL YNNNKTGQSL WNVAFNLPSN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54320.3	3e-82	AP2 family protein