PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028098638.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

TCP

Protein Properties

Length: 380aa MW: 40088.3 Da PI: 9.5084

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028098638.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	112.4	6.3e-35	88	169	2	74
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.........e 74 ++++++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++t+ WLlq a+++i+e+tgt++ +a ++ + XP_028098638.1 88 TARRSSTKDRHTKVEGRGRRIRIPATCAARIFQLTRELGHKSDGETVRWLLQHAEQSIIEATGTGTVPAIAVsvggtlkipT 169 6799************************************************************888884443333322211 PP

Sequence ? help Back to Top
Protein Sequence Length: 380 aa Download sequence
MSSFQEHGFE PDDDGGTSDL STSAGEPTTA PTQPVLKEEP IQSDSDSPDQ KSNNNNNPQA 60 QPIGMVPLMQ MQMQMQLPIH MPMPVATTAR RSSTKDRHTK VEGRGRRIRI PATCAARIFQ 120 LTRELGHKSD GETVRWLLQH AEQSIIEATG TGTVPAIAVS VGGTLKIPTT TSTKQDGGGE 180 EGGGGLTKRR RRSSKSEFYD VAASNDGVSQ AAGLAPMGPT PVAAAAPQGL VPIWAVSNAG 240 MMIPSNAFWM IPPPSAAATP VAPAATPQLW TISPSVTPVF NMSARPISSF VSAAQPNASE 300 VRVVPPSTAV HGSVMTSETV DTVEVKGATK KSSMAPASVS SRGIKAQMLR GFSLEIYDKK 360 ELQFMGRVGN QQIQFGSSKS

Sequence ? help Back to Top

Protein Sequence Length: 380 aa Download sequence

MSSFQEHGFE PDDDGGTSDL STSAGEPTTA PTQPVLKEEP IQSDSDSPDQ KSNNNNNPQA  60
QPIGMVPLMQ MQMQMQLPIH MPMPVATTAR RSSTKDRHTK VEGRGRRIRI PATCAARIFQ  120
LTRELGHKSD GETVRWLLQH AEQSIIEATG TGTVPAIAVS VGGTLKIPTT TSTKQDGGGE  180
EGGGGLTKRR RRSSKSEFYD VAASNDGVSQ AAGLAPMGPT PVAAAAPQGL VPIWAVSNAG  240
MMIPSNAFWM IPPPSAAATP VAPAATPQLW TISPSVTPVF NMSARPISSF VSAAQPNASE  300
VRVVPPSTAV HGSVMTSETV DTVEVKGATK KSSMAPASVS SRGIKAQMLR GFSLEIYDKK  360
ELQFMGRVGN QQIQFGSSKS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G51910.2	7e-61	TCP family protein