PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028089745.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

Nin-like

Protein Properties

Length: 776aa MW: 86930.4 Da PI: 6.434

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028089745.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	49.6	7.8e-16	176	217	5	46
RWP-RK 5 isledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPh 46 ++ e+l+++F + +d+A++ gv+++++KriCR++GI+RWP+ XP_028089745.1 176 LTRENLEQHFGSSREDVANSFGVSVSTMKRICRKHGISRWPF 217 899**************************************7 PP
2	RWP-RK	57.6	2.5e-18	318	367	2	51
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiks 51 e+ +s+edl+++F ++ dAAk Lgv+++++Kri Rq+GI+RWP+ k ++ XP_028089745.1 318 ENVLSFEDLQQHFGCKLDDAAKALGVSVSTVKRISRQHGIPRWPSHKKRK 367 5679****************************************987665 PP

Sequence ? help Back to Top
Protein Sequence Length: 776 aa Download sequence
MFLDEIPRWW WRWRWRQRLK LKSDLLSSLC VCEKEPDDIA EMTRTFVLES IPSGLFLPPK 60 SPKMVSIWSC LSVVKISRKI SIGLLQVLPS VQLPQTLHIV IVEEKMTRLL SCSGEFISQD 120 SSLAEERSVE ITVEVDATNN GAHGVKAYEN FPIVSHSEKK NMTDKLKRNY KSISVLTREN 180 LEQHFGSSRE DVANSFGVSV STMKRICRKH GISRWPFQPE RKKERLTEVI SPSMHEKHDS 240 RLRCIQKPLH ARSSPRTIAL LDGGEMVQLD SSKQQSLVEF DVTTNSAHLV KASQSCSTVS 300 HLDETNSRET LKRKCTTENV LSFEDLQQHF GCKLDDAAKA LGVSVSTVKR ISRQHGIPRW 360 PSHKKRKVSK TDCILLEPQG EKDVSSTCSQ MPTDGQTERG NEMVGQLQDQ NEGPNLLNTE 420 NGSNKESITT LIFEDSVPVS EIDCILSEPE GEKNVSPTCK TPIVGIVLDF IKGPNLSNTE 480 NHSNKKRITT PTFLDSVPVF ERDCILLEPQ GEKNASPTHK TPTNGQTEVA NGMVGHIRDQ 540 NGIVPEFIEG PNLSNIENRS NEKSLTTPNF QDSAPGNYPA MDFSISSTYR ESGEAGGSSE 600 LAFQPKELTQ STAYPNPDTC MFTQPHISLR EMLIENVGSS KDSRNFPTSA MGFLTGGLVS 660 ESSWTMPLCS DQAPMQTMTT IPHTMPHLTE KQDIRTVTFK AQYRDKKIKF RLSLSSGIVE 720 LKKEVTNRLG ELGIFEVHYQ DNDNEWILIG CDTDVLDCFE LSSSSGNEVV RLLVRD

Sequence ? help Back to Top

Protein Sequence Length: 776 aa Download sequence

MFLDEIPRWW WRWRWRQRLK LKSDLLSSLC VCEKEPDDIA EMTRTFVLES IPSGLFLPPK  60
SPKMVSIWSC LSVVKISRKI SIGLLQVLPS VQLPQTLHIV IVEEKMTRLL SCSGEFISQD  120
SSLAEERSVE ITVEVDATNN GAHGVKAYEN FPIVSHSEKK NMTDKLKRNY KSISVLTREN  180
LEQHFGSSRE DVANSFGVSV STMKRICRKH GISRWPFQPE RKKERLTEVI SPSMHEKHDS  240
RLRCIQKPLH ARSSPRTIAL LDGGEMVQLD SSKQQSLVEF DVTTNSAHLV KASQSCSTVS  300
HLDETNSRET LKRKCTTENV LSFEDLQQHF GCKLDDAAKA LGVSVSTVKR ISRQHGIPRW  360
PSHKKRKVSK TDCILLEPQG EKDVSSTCSQ MPTDGQTERG NEMVGQLQDQ NEGPNLLNTE  420
NGSNKESITT LIFEDSVPVS EIDCILSEPE GEKNVSPTCK TPIVGIVLDF IKGPNLSNTE  480
NHSNKKRITT PTFLDSVPVF ERDCILLEPQ GEKNASPTHK TPTNGQTEVA NGMVGHIRDQ  540
NGIVPEFIEG PNLSNIENRS NEKSLTTPNF QDSAPGNYPA MDFSISSTYR ESGEAGGSSE  600
LAFQPKELTQ STAYPNPDTC MFTQPHISLR EMLIENVGSS KDSRNFPTSA MGFLTGGLVS  660
ESSWTMPLCS DQAPMQTMTT IPHTMPHLTE KQDIRTVTFK AQYRDKKIKF RLSLSSGIVE  720
LKKEVTNRLG ELGIFEVHYQ DNDNEWILIG CDTDVLDCFE LSSSSGNEVV RLLVRD

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	358	367	PRWPSHKKRK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24020.1	5e-25	Nin-like family protein