PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028089187.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

MYB

Protein Properties

Length: 352aa MW: 40071.9 Da PI: 6.6473

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028089187.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	51	3.4e-16	14	62	1	48
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEd +l++ ++++G+g +W + +++ g++R++k+c++rw++yl XP_028089187.1 14 KGPWSPEEDSKLKEFIEKYGTGgNWIALPQKAGLKRCGKSCRLRWLNYL 62 79*********************************************97 PP
2	Myb_DNA-binding	39.7	1.1e-12	69	111	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g +++eEd ++ +++ G++ W+ Ia+ ++ gRt++++k++w++ XP_028089187.1 69 GEFSEEEDRIICTLFASIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111 789****************.*****.*********97 PP

Sequence ? help Back to Top
Protein Sequence Length: 352 aa Download sequence
MGRAPCCDKA NVKKGPWSPE EDSKLKEFIE KYGTGGNWIA LPQKAGLKRC GKSCRLRWLN 60 YLRPNIKHGE FSEEEDRIIC TLFASIGSRW SIIAAQLPGR TDNDIKNYWN TKLKKKLMGM 120 VMVPPNHRKP PPYPPPPPPH SQFPPPPPPP PPPLYRDCTS YYNNNNNPAR SFTALEPTSI 180 PPPNLINNNY NPSLSANYCL LQTQESLFSP MQYYPPLKES FQLVFVGDQA SCSSSDGSCS 240 QISHGKEIKQ EDMGFQSYMS NGFEENHKFM LDYGNNNNPN NGGDQNLISS TCTWIDEKPN 300 VNGYFGNTPL EYDLEEVKKL ISTDNECNNN NNNSFFFNDE NKTQERTMDY YY

Sequence ? help Back to Top

Protein Sequence Length: 352 aa Download sequence

MGRAPCCDKA NVKKGPWSPE EDSKLKEFIE KYGTGGNWIA LPQKAGLKRC GKSCRLRWLN  60
YLRPNIKHGE FSEEEDRIIC TLFASIGSRW SIIAAQLPGR TDNDIKNYWN TKLKKKLMGM  120
VMVPPNHRKP PPYPPPPPPH SQFPPPPPPP PPPLYRDCTS YYNNNNNPAR SFTALEPTSI  180
PPPNLINNNY NPSLSANYCL LQTQESLFSP MQYYPPLKES FQLVFVGDQA SCSSSDGSCS  240
QISHGKEIKQ EDMGFQSYMS NGFEENHKFM LDYGNNNNPN NGGDQNLISS TCTWIDEKPN  300
VNGYFGNTPL EYDLEEVKKL ISTDNECNNN NNNSFFFNDE NKTQERTMDY YY

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G57620.1	1e-73	MYB family protein