PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028086202.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

CO-like

Protein Properties

Length: 362aa MW: 39490.3 Da PI: 5.8375

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028086202.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	22.5	2.4e-07	15	50	4	40
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkgHtvv 40 + C+ ++ + fC+ ++++lC C ++ H +H++v XP_028086202.1 15 KPCDSCKVAAALVFCRVDSVFLCMGCDVA-HTRHERV 50 57***999****************.99*976 PP
2	zf-B_box	25	4e-08	50	92	3	39
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39 ++C+ +e+ +++ C+ + lC +C +H+ H++ XP_028086202.1 50 VWMCEVCEQAPASVTCKADAAALCVTCDRDIHSAnplsrrHER 92 689*****************************65777777775 PP
3	CCT	70.3	4.9e-24	286	329	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea++lRY+eKrk+RkFeK+irY+sRKa+Ae+RpR+KGrF+k++ XP_028086202.1 286 REARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRT 329 9*****************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 362 aa Download sequence
MEESGGGNWW GVVAKPCDSC KVAAALVFCR VDSVFLCMGC DVAHTRHERV WMCEVCEQAP 60 ASVTCKADAA ALCVTCDRDI HSANPLSRRH ERFPVVPFFD SATASAASSA TVLFPAAADE 120 ITDHHQHETT AAAATAPSWL IPIGATPKVA GNEPEMKSIE LLMSESDQFL DFDHPISINS 180 SGTDSVVPVQ VQPTKSLQMV NHSTDNNYLE IDFSSSKLNS FNNNNNNNNI YTAQCFSQSM 240 SSSSVDVGIV PDGSSMSEIS YPFGKIEVDV GGSVLPNNGT VQGLDREARV LRYREKRKNR 300 KFEKTIRYAS RKAYAETRPR IKGRFAKRTD AEPEVDVMNR MFSSGSSAFM ADTIGYGVVP 360 SF

Sequence ? help Back to Top

Protein Sequence Length: 362 aa Download sequence

MEESGGGNWW GVVAKPCDSC KVAAALVFCR VDSVFLCMGC DVAHTRHERV WMCEVCEQAP  60
ASVTCKADAA ALCVTCDRDI HSANPLSRRH ERFPVVPFFD SATASAASSA TVLFPAAADE  120
ITDHHQHETT AAAATAPSWL IPIGATPKVA GNEPEMKSIE LLMSESDQFL DFDHPISINS  180
SGTDSVVPVQ VQPTKSLQMV NHSTDNNYLE IDFSSSKLNS FNNNNNNNNI YTAQCFSQSM  240
SSSSVDVGIV PDGSSMSEIS YPFGKIEVDV GGSVLPNNGT VQGLDREARV LRYREKRKNR  300
KFEKTIRYAS RKAYAETRPR IKGRFAKRTD AEPEVDVMNR MFSSGSSAFM ADTIGYGVVP  360
SF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G57660.1	1e-91	CO-like family protein