PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028073820.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

AP2

Protein Properties

Length: 623aa MW: 69198.7 Da PI: 7.0042

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028073820.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	47.9	3.2e-15	293	352	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++gr++A+++d ++ g ++ ++++lg ++ + +Aa+a++ a++k++g XP_028073820.1 293 SQYRGVTRHRWTGRYEAHLWDnSCKkEGqsRKgRQVYLGGYDMEAKAARAYDLAALKYWG 352 78*****************988886678446******99***********98 PP
2	AP2	45.8	1.6e-14	397	446	3	55
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g XP_028073820.1 397 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 446 9*************988532...5**********************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 623 aa Download sequence
MKSMSNDDSN NWLGFSLSHM NNMEVPSDPH HPPPSNAVST ELPTSFFHSP THFSYSGSSY 60 GAQNGGFYSP LSVMPLKSDG SLCIMEALTR SQPQQVMTTT STPKLEDFFG GATMGAHHYE 120 SSDREAMALS LDSMYYHHNP DHETNNSQQQ QIQAQQYSDY YAFRGHEVYQ TPFKEGTKEA 180 QVSDCNLQLP NMAEDDFSGM KNWVSRNYYP ASHALDNGVE SGSVSALGYR DLQSLSLSMS 240 PGSQSSCVTG SQQISPTVTE CVAMEGKKRG SEKLDQKQVV HRKSIDTFGQ RTSQYRGVTR 300 HRWTGRYEAH LWDNSCKKEG QSRKGRQVYL GGYDMEAKAA RAYDLAALKY WGPSTHINFP 360 LENYQQELEH MQNMTRQEYV AHLRRKSSGF SRGASMYRGV TRHHQHGRWQ ARIGRVAGNK 420 DLYLGTFSTQ EEAAEAYDIA AIKFRGVSAV TNFDISRYDV ERIMASNTLL AGDLARRNKA 480 IESAKEVPNH ELAILNCNSE ATHLKENTGS ESDWKMTLYQ SPQHDLIGIK TMSSGQQEVN 540 DSAKVVNHLS GGSSLVTSLC SSREDSPDKQ NGLPLVFAMP PSASKLFTSS ASSVSSWISS 600 AQLRQPPISM PHVPVFAAWA DAS

Sequence ? help Back to Top

Protein Sequence Length: 623 aa Download sequence

MKSMSNDDSN NWLGFSLSHM NNMEVPSDPH HPPPSNAVST ELPTSFFHSP THFSYSGSSY  60
GAQNGGFYSP LSVMPLKSDG SLCIMEALTR SQPQQVMTTT STPKLEDFFG GATMGAHHYE  120
SSDREAMALS LDSMYYHHNP DHETNNSQQQ QIQAQQYSDY YAFRGHEVYQ TPFKEGTKEA  180
QVSDCNLQLP NMAEDDFSGM KNWVSRNYYP ASHALDNGVE SGSVSALGYR DLQSLSLSMS  240
PGSQSSCVTG SQQISPTVTE CVAMEGKKRG SEKLDQKQVV HRKSIDTFGQ RTSQYRGVTR  300
HRWTGRYEAH LWDNSCKKEG QSRKGRQVYL GGYDMEAKAA RAYDLAALKY WGPSTHINFP  360
LENYQQELEH MQNMTRQEYV AHLRRKSSGF SRGASMYRGV TRHHQHGRWQ ARIGRVAGNK  420
DLYLGTFSTQ EEAAEAYDIA AIKFRGVSAV TNFDISRYDV ERIMASNTLL AGDLARRNKA  480
IESAKEVPNH ELAILNCNSE ATHLKENTGS ESDWKMTLYQ SPQHDLIGIK TMSSGQQEVN  540
DSAKVVNHLS GGSSLVTSLC SSREDSPDKQ NGLPLVFAMP PSASKLFTSS ASSVSSWISS  600
AQLRQPPISM PHVPVFAAWA DAS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37750.1	1e-120	AP2 family protein