PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028063332.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

AP2

Protein Properties

Length: 611aa MW: 68100.4 Da PI: 6.9639

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028063332.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	47.5	4.4e-15	280	339	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++gr++A+++d s+ g ++ ++++lg ++ +e+Aa+ ++ a++k++g XP_028063332.1 280 SQYRGVTRHRWTGRFEAHLWDnSSKkEGqtRKgRQVYLGGYDMEEKAARSYDLAALKYWG 339 78*****************655585578446***********************98 PP
2	AP2	46.3	1e-14	384	433	3	55
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g XP_028063332.1 384 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 433 9*************988532...5**********************998 PP

Sequence ? help Back to Top
Protein Sequence Length: 611 aa Download sequence
MKSMNDNNNG NDSNTNWLGF SLSPQIKMEV TSDPHHHHQF NHQPQASPIT AVPTSFYLSP 60 PHLNSSAICY GVGENNGFYS PLSVMPFKSD SSLSIMEALS RSQQEGMVPN STPKLEDFLG 120 GATMALSLDS MYYNQNDGQE NNRQHCLDLI HQEPFRQNQR EIEVHHHHPY YSELSCNDGL 180 YQTPLEEEES TEISTMAGHH YYSELSNSML GDGGASGNLQ SLSLSMSPGS QSSCVTAPRQ 240 ISPTVTEIMA IETKKRGSSK VAQKQPVHRK SIDTFGQRTS QYRGVTRHRW TGRFEAHLWD 300 NSSKKEGQTR KGRQVYLGGY DMEEKAARSY DLAALKYWGP STHINFPLEN YRQELEDMKN 360 MTRQEFVAHL RRKSSGFSRG ASMYRGVTRH HQHGRWQARI GRVAGNKDLY LGTFSTQEEA 420 AEAYDIAAIK FRGSNAVTNF DISRYDVERI SASNTLLAGE LAKRNKEREP NIATIEYNPS 480 TKNNDDNGNS SDWKMVACQN ACVSSVDEKQ LGNGNYRNSS FTVALQDLIG IDTVNTSQQI 540 MDESAKLGTH FSNPSSLVTS LSSSREASPD KTGPSMLFAK PPLAWIPSAQ LRAAAPISMA 600 HLPVFAAWND T

Sequence ? help Back to Top

Protein Sequence Length: 611 aa Download sequence

MKSMNDNNNG NDSNTNWLGF SLSPQIKMEV TSDPHHHHQF NHQPQASPIT AVPTSFYLSP  60
PHLNSSAICY GVGENNGFYS PLSVMPFKSD SSLSIMEALS RSQQEGMVPN STPKLEDFLG  120
GATMALSLDS MYYNQNDGQE NNRQHCLDLI HQEPFRQNQR EIEVHHHHPY YSELSCNDGL  180
YQTPLEEEES TEISTMAGHH YYSELSNSML GDGGASGNLQ SLSLSMSPGS QSSCVTAPRQ  240
ISPTVTEIMA IETKKRGSSK VAQKQPVHRK SIDTFGQRTS QYRGVTRHRW TGRFEAHLWD  300
NSSKKEGQTR KGRQVYLGGY DMEEKAARSY DLAALKYWGP STHINFPLEN YRQELEDMKN  360
MTRQEFVAHL RRKSSGFSRG ASMYRGVTRH HQHGRWQARI GRVAGNKDLY LGTFSTQEEA  420
AEAYDIAAIK FRGSNAVTNF DISRYDVERI SASNTLLAGE LAKRNKEREP NIATIEYNPS  480
TKNNDDNGNS SDWKMVACQN ACVSSVDEKQ LGNGNYRNSS FTVALQDLIG IDTVNTSQQI  540
MDESAKLGTH FSNPSSLVTS LSSSREASPD KTGPSMLFAK PPLAWIPSAQ LRAAAPISMA  600
HLPVFAAWND T

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37750.1	1e-148	AP2 family protein