PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_028059568.1

Organism

Camellia sinensis var. sinensis

Taxonomic ID

542762

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Theaceae; Camellia; Camellia sinensis

Family

AP2

Protein Properties

Length: 667aa MW: 73893.4 Da PI: 6.677

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_028059568.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	47.8	3.6e-15	317	376	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++gr++A+++d ++ g ++ ++++lg ++ +e+Aa+a++ a++k++g XP_028059568.1 317 SQYRGVTRHRWTGRYEAHLWDnSCKkEGqsRKgRQVYLGGYDVEEKAARAYDLAALKYWG 376 78*****************988886678446***********************98 PP
2	AP2	45.6	1.7e-14	421	470	3	55
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g XP_028059568.1 421 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 470 9*************988532...5**********************997 PP

Sequence ? help Back to Top
Protein Sequence Length: 667 aa Download sequence
MKSMSNDNNT NTNTNNSNNN WLGFSLSSSH MNTIGVSSEP HHQTHISLSG SVSSALPTSF 60 FHSPSHFSYS GACYGVHEAE NGAFYSPLTV MPLKSDGSLC IMEALTRSQT PQGMETTSTP 120 KLEDFFGGAT MGTHHYESCD REAMALSLDS LYYHQQQNPD HETNNNNTSQ DFLNHQPQNQ 180 IHVQQYSDYS AFRGHEVYQT SPLTEDTKQA QITTMAAEDE ICGMKNWVSR NFHGSHGLGD 240 NGGESGSMSA LGYGDLQSLS LSMSPGSQSS CVTGSHQISP AVTECVALET KKRGSVKLDQ 300 KQTVHRKSID TFGQRTSQYR GVTRHRWTGR YEAHLWDNSC KKEGQSRKGR QVYLGGYDVE 360 EKAARAYDLA ALKYWGASTH INFPVENYQQ ELEDMKNMTR QEYVAHLRRK SSGFSRGASM 420 YRGVTRHHQH GRWQARIGRV AGNKDLYLGT FSTQEEAAEA YDIAAIKFRG VNAVTNFDIS 480 RYDVERIMAS NTLLAGELAR RNKEIESIKE VPNQDLLTLN HTVEATLPKE SDGSKSNWEM 540 TLYQHQRQDD GIENCKNNPS FSMASDHDLV GNRMIGLDQQ EVDESGKMAN HLSNASSLVT 600 SLASSREGSP DKQNGLPLLF TMPPSSASAK FANSSTSAVN SWMSSTQLRP SMSLPHVPVF 660 AAWTDAS

Sequence ? help Back to Top

Protein Sequence Length: 667 aa Download sequence

MKSMSNDNNT NTNTNNSNNN WLGFSLSSSH MNTIGVSSEP HHQTHISLSG SVSSALPTSF  60
FHSPSHFSYS GACYGVHEAE NGAFYSPLTV MPLKSDGSLC IMEALTRSQT PQGMETTSTP  120
KLEDFFGGAT MGTHHYESCD REAMALSLDS LYYHQQQNPD HETNNNNTSQ DFLNHQPQNQ  180
IHVQQYSDYS AFRGHEVYQT SPLTEDTKQA QITTMAAEDE ICGMKNWVSR NFHGSHGLGD  240
NGGESGSMSA LGYGDLQSLS LSMSPGSQSS CVTGSHQISP AVTECVALET KKRGSVKLDQ  300
KQTVHRKSID TFGQRTSQYR GVTRHRWTGR YEAHLWDNSC KKEGQSRKGR QVYLGGYDVE  360
EKAARAYDLA ALKYWGASTH INFPVENYQQ ELEDMKNMTR QEYVAHLRRK SSGFSRGASM  420
YRGVTRHHQH GRWQARIGRV AGNKDLYLGT FSTQEEAAEA YDIAAIKFRG VNAVTNFDIS  480
RYDVERIMAS NTLLAGELAR RNKEIESIKE VPNQDLLTLN HTVEATLPKE SDGSKSNWEM  540
TLYQHQRQDD GIENCKNNPS FSMASDHDLV GNRMIGLDQQ EVDESGKMAN HLSNASSLVT  600
SLASSREGSP DKQNGLPLLF TMPPSSASAK FANSSTSAVN SWMSSTQLRP SMSLPHVPVF  660
AAWTDAS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37750.1	1e-157	AP2 family protein